Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.0e-247 858.6 421 100.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.6e-236 822.4 421 95.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 4.3e-234 814.3 421 94.3
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 7.4e-234 813.5 421 94.3
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-231 806.2 435 91.3
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 3.3e-226 788.1 416 91.8
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.1e-208 728.0 418 83.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.6e-204 716.1 418 82.8
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.0e-203 713.4 418 81.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.8e-203 712.6 417 81.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.0e-203 711.8 418 81.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 3.0e-203 711.8 420 81.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.8e-203 710.7 418 82.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.2e-202 709.9 417 82.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.7e-202 707.6 418 81.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.7e-201 706.1 416 81.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-200 703.0 457 75.5
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.4e-200 701.0 419 80.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.2e-199 699.9 417 82.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.2e-199 699.9 418 79.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.6e-199 699.5 417 80.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.6e-199 699.5 417 80.1
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.3e-198 695.7 417 80.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.9e-198 695.3 439 77.9
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.9e-198 695.3 435 79.3
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.0e-198 694.5 417 78.9
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.0e-198 694.5 416 78.1
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 8.6e-198 693.7 418 80.1
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-197 693.3 417 81.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-197 693.0 417 80.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.5e-197 693.0 412 80.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.5e-197 692.2 412 79.9
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.2e-197 691.8 418 79.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 9.5e-197 690.3 418 79.4
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 9.5e-197 690.3 414 80.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.5e-197 690.3 412 79.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.8e-196 688.7 417 80.3
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 3.6e-196 688.3 414 80.0
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 6.1e-196 687.6 417 79.9
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.1e-196 687.6 416 77.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.1e-196 687.6 437 76.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-195 685.6 417 80.3
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.2e-195 684.5 416 79.1
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 5.2e-195 684.5 416 79.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.2e-195 684.5 417 77.9
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.2e-194 683.3 416 79.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.2e-194 683.3 416 79.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.5e-194 682.9 416 79.1
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.6e-194 682.2 417 79.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.7e-194 681.0 414 78.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 9.8e-194 680.2 416 78.4
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-193 679.9 434 77.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.7e-193 679.5 416 78.6
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.7e-193 678.3 416 77.4
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 6.3e-193 677.6 415 77.8
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.1e-192 676.8 498 68.1
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-192 676.4 416 78.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-192 676.4 416 79.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.4e-192 676.4 416 77.4
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.8e-192 676.0 418 78.0
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 77.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 417 78.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.1e-192 674.9 417 78.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 5.4e-192 674.5 417 76.7
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 9.2e-192 673.7 417 78.4
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.6e-191 672.9 416 76.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.6e-191 672.9 416 77.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.6e-191 672.9 417 77.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.0e-191 672.5 417 77.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.0e-191 672.5 412 76.9
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.7e-191 672.2 417 77.9
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.7e-191 672.2 413 76.3
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.5e-191 671.4 416 76.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 5.9e-191 671.0 416 76.2
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.3e-190 669.8 411 78.1
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.3e-190 669.8 409 78.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 76.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 6.6e-190 667.5 416 76.2
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 76.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 76.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.5e-189 666.4 416 76.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 3.3e-189 665.2 411 76.6
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 4.3e-189 664.8 416 77.4
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.6e-189 664.5 416 77.2
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.3e-189 664.1 419 74.5
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.6e-188 661.8 417 77.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 6.1e-188 661.0 417 76.0
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.0e-188 660.6 409 77.3
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.0e-187 660.2 416 75.7
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.3e-187 659.1 412 76.0
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.2e-187 657.9 433 74.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.2e-187 657.9 433 74.6
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.2e-187 657.9 416 74.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.8e-187 657.5 411 76.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.2e-186 656.8 415 74.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.6e-186 655.6 417 74.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.4e-186 655.2 433 74.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 4.4e-186 654.8 416 75.2
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.7e-186 654.4 412 75.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.3e-185 653.3 416 75.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.2e-185 652.5 418 75.4
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-185 652.5 416 75.0
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.9e-185 652.1 416 74.3
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 4.9e-185 651.4 416 74.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.1e-184 650.2 417 74.8
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.4e-184 649.0 417 76.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 4.1e-184 648.3 416 75.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.0e-183 646.0 416 73.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.6e-183 644.8 416 74.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 5.9e-183 644.4 411 74.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 7.8e-183 644.0 416 74.3
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.0e-182 643.7 412 73.8
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.5e-181 639.8 417 72.9
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.5e-181 639.0 403 77.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.3e-181 638.6 417 75.1
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.3e-181 637.5 418 75.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 7.3e-181 637.5 413 72.9
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-180 635.6 449 69.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.3e-179 632.5 413 74.1
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 4.0e-179 631.7 415 73.0
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-177 626.3 416 74.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.7e-177 626.3 417 73.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.7e-175 619.0 416 71.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.3e-174 615.9 369 79.4
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.0e-174 615.5 366 80.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-173 613.6 412 72.1
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 9.5e-173 610.5 412 70.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.1e-172 609.4 418 71.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.6e-172 608.6 416 71.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 4.9e-169 598.2 421 67.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-167 593.6 363 77.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.3e-161 573.5 416 69.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.4e-160 569.3 360 75.3
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-157 560.5 341 77.7
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.6e-157 558.1 341 77.7
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 8.1e-156 554.3 413 63.4
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.4e-155 552.7 435 66.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.4e-153 544.3 410 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.6e-146 522.7 411 61.1
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.3e-145 520.4 410 60.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 4.6e-143 511.9 417 61.4
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.2e-135 487.3 428 56.3
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.9e-134 482.3 291 80.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.5e-133 480.3 342 69.3
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-124 449.5 317 71.3
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.7e-119 433.0 291 74.6
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 4.6e-119 432.2 302 71.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.1e-110 402.1 198 96.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 6.7e-110 401.7 223 83.9
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.2e-108 396.7 198 94.9
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 7.7e-106 388.3 502 41.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 5.0e-105 385.6 405 47.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.3e-102 376.7 407 47.9
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-101 372.9 235 76.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.3e-101 372.9 426 46.2
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.5e-93 347.4 241 68.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-78 297.7 219 68.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-75 287.0 216 68.5
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.9e-68 263.5 174 72.4
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.9e-68 263.5 258 55.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.5e-64 250.4 163 74.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.8e-61 238.4 121 90.1
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-59 235.0 151 76.2
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.4e-59 232.6 178 65.7
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.3e-57 228.0 229 54.6
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.5e-56 221.9 155 67.1
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.2e-51 206.8 181 59.1
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.2e-51 205.3 124 75.8
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 9.5e-48 195.3 336 38.7
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.0e-46 189.9 127 70.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.8e-44 183.3 342 38.0
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.1e-41 172.9 127 65.4
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.3e-40 170.2 100 80.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.9e-38 162.5 122 63.9
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.4e-27 128.3 78 75.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-27 127.5 125 56.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-24 118.6 87 69.0
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.4e-22 110.9 71 73.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.4e-19 101.7 59 79.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 5.8e-13 79.7 86 44.2
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.0e-12 79.0 99 41.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.9e-11 74.7 60 65.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.3e-08 63.5 131 32.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 6.3e-07 59.7 50 58.0
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 4.1e-06 57.0 34 70.6


User provided reference genes

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