Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G606.13 Capsicum annuum HOM05D000364 ORTHO05D000235 1.5e-52 209.1 100 100.0
Peaxi162Scf00016g02432 Petunia axillaris HOM05D000364 ORTHO05D000235 1.7e-19 99.4 55 85.5
Solyc01g107490.2 Solanum lycopersicum HOM05D000364 ORTHO05D000235 3.8e-19 98.2 56 83.9
Sopen01g049720 Solanum pennellii HOM05D000364 ORTHO05D000235 3.8e-19 98.2 56 83.9
Nitab4.5_0001480g0160 Nicotiana tabacum HOM05D000364 ORTHO05D000235 4.9e-19 97.8 53 84.9
Nitab4.5_0004326g0010 Nicotiana tabacum HOM05D000364 ORTHO05D000235 2.4e-18 95.5 53 83.0
PGSC0003DMG401025764 Solanum tuberosum HOM05D000364 ORTHO05D000235 2.7e-17 92.0 54 83.3
QL11p033020 Quercus lobata HOM05D000364 ORTHO05D000235 4.9e-11 71.2 52 69.2
Actinidia00404 Actinidia chinensis HOM05D000364 ORTHO05D000235 2.5e-10 68.9 53 66.0
CANSAT25G3174 Cannabis sativa HOM05D000364 ORTHO05D000235 1.6e-09 66.2 77 50.6
Prupe.8G136800 Prunus persica HOM05D000364 ORTHO05D000235 2.7e-09 65.5 48 66.7
Cc02_g19350 Coffea canephora HOM05D000364 ORTHO05D000235 7.9e-09 63.9 44 68.2
MSTRG.5335 Avicennia marina HOM05D000364 ORTHO05D000235 1.0e-08 63.5 52 63.5
Oeu044273.1 Olea europaea HOM05D000364 ORTHO05D000235 1.3e-08 63.2 61 54.1
Thecc.02G110200 Theobroma cacao HOM05D000364 ORTHO05D000235 1.8e-08 62.8 56 62.5
Actinidia17488 Actinidia chinensis HOM05D000364 ORTHO05D000235 2.3e-08 62.4 52 65.4
CSS0005359 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.3e-08 62.4 80 51.2
CSS0031589 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.3e-08 62.4 80 51.2
PSO675G4463 Papaver somniferum HOM05D000364 ORTHO05D000235 2.3e-08 62.4 49 65.3
CANSAT25G1218 Cannabis sativa HOM05D000364 ORTHO05D000235 3.0e-08 62.0 52 63.5
Dinv15772 Davidia involucrata HOM05D000364 ORTHO05D000235 3.9e-08 61.6 56 58.9
FAN27G0718 Fragaria x ananassa HOM05D000364 ORTHO05D000235 3.9e-08 61.6 80 41.2
Cfa004600 Carpinus fangiana HOM05D000364 ORTHO05D000235 5.1e-08 61.2 60 58.3
Duzib248G0059 Durio zibethinus HOM05D000364 ORTHO05D000235 5.1e-08 61.2 56 66.1
FAN15G1292 Fragaria x ananassa HOM05D000364 ORTHO05D000235 8.7e-08 60.5 94 36.2
Ciclev10028922m.g Citrus clementina HOM05D000364 ORTHO05D000235 1.1e-07 60.1 55 61.8
Lsat_1_v5_gn_7_85821 Lactuca sativa HOM05D000364 ORTHO05D000235 1.1e-07 60.1 78 46.2
PSO541G2086 Papaver somniferum HOM05D000364 ORTHO05D000235 1.1e-07 60.1 49 61.2
GSVIVG01037903001 Vitis vinifera HOM05D000364 ORTHO05D000235 1.1e-07 60.1 47 70.2
Rhsim11G0158500 Rhododendron simsii HOM05D000364 ORTHO05D000235 1.5e-07 59.7 54 59.3
DCAR_029089 Daucus carota HOM05D000364 ORTHO05D000235 1.9e-07 59.3 37 75.7
Lalb_Chr02g0145241 Lupinus albus HOM05D000364 ORTHO05D000235 1.9e-07 59.3 53 58.5
Oeu040363.1 Olea europaea HOM05D000364 ORTHO05D000235 2.5e-07 58.9 66 39.4
COL.COLO4_32577 Corchorus olitorius HOM05D000364 ORTHO05D000235 3.3e-07 58.5 49 61.2
Phvul.007G041200 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 3.3e-07 58.5 75 42.7
Gohir.A13G044200 Gossypium hirsutum HOM05D000364 ORTHO05D000235 4.3e-07 58.2 52 59.6
Gohir.D13G043300 Gossypium hirsutum HOM05D000364 ORTHO05D000235 4.3e-07 58.2 52 59.6
Gorai.013G048000 Gossypium raimondii HOM05D000364 ORTHO05D000235 4.3e-07 58.2 52 59.6
SalBow2G0553 Salvia bowleyana HOM05D000364 ORTHO05D000235 4.3e-07 58.2 67 41.8
Atru.chr5.2473 Acer truncatum HOM05D000364 ORTHO05D000235 5.7e-07 57.8 69 49.3
TAR628G1537 Trochodendron aralioides HOM05D000364 ORTHO05D000235 5.7e-07 57.8 44 61.4
Aa31LG8G6250 Aethionema arabicum HOM05D000364 ORTHO05D000235 7.4e-07 57.4 56 53.6
Nn5g30437 Nelumbo nucifera HOM05D000364 ORTHO05D000235 7.4e-07 57.4 49 57.1
Sabra16G0187900 Salix brachista HOM05D000364 ORTHO05D000235 7.4e-07 57.4 53 58.5
MBI16_g17768_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 9.6e-07 57.0 44 65.9
vmacro01994 Vaccinium macrocarpon HOM05D000364 ORTHO05D000235 9.6e-07 57.0 54 59.3
Cpa.g.sc106.107 Carica papaya HOM05D000364 ORTHO05D000235 1.6e-06 56.2 54 55.6
Ca_11063_v3 Cicer arietinum L. HOM05D000364 ORTHO05D000235 1.6e-06 56.2 53 54.7
Lj9C325G1 Lonicera japonica HOM05D000364 ORTHO05D000235 1.6e-06 56.2 58 56.9
Lalb_Chr06g0165411 Lupinus albus HOM05D000364 ORTHO05D000235 1.6e-06 56.2 51 52.9
RcHm_v2.0_Chr6g0254731 Rosa chinensis HOM05D000364 ORTHO05D000235 1.6e-06 56.2 60 51.7
TPR.G19067 Trifolium pratense HOM05D000364 ORTHO05D000235 1.6e-06 56.2 47 51.1
Migut.N01157 Erythranthe guttata HOM05D000364 ORTHO05D000235 2.1e-06 55.8 53 52.8
HanXRQChr17g0570561 Helianthus annuus HOM05D000364 ORTHO05D000235 2.1e-06 55.8 52 50.0
Potri.001G299300 Populus trichocarpa HOM05D000364 ORTHO05D000235 2.1e-06 55.8 51 58.8
CiPaw.06G168800 Carya illinoinensis HOM05D000364 ORTHO05D000235 2.8e-06 55.5 33 75.8
MD05G1091300 Malus domestica HOM05D000364 ORTHO05D000235 3.7e-06 55.1 38 65.8
THA.LOC104825377 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 3.7e-06 55.1 52 51.9
arahy.Tifrunner.gnm1.ann1.E736SD Arachis hypogaea HOM05D000364 ORTHO05D000235 4.8e-06 54.7 51 51.0
ATR0205G021 Amborella trichopoda HOM05D000364 ORTHO05D000235 6.2e-06 54.3 50 58.0
AT3G19500 Arabidopsis thaliana HOM05D000364 ORTHO05D000235 6.2e-06 54.3 57 50.9
arahy.Tifrunner.gnm1.ann1.5S0LFQ Arachis hypogaea HOM05D000364 ORTHO05D000235 6.2e-06 54.3 49 51.0
Carub.0003s1930 Capsella rubella HOM05D000364 ORTHO05D000235 6.2e-06 54.3 44 59.1
Hma1.2p1_2341F.1_g320310 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 6.2e-06 54.3 79 40.5
Medtr1g107185 Medicago truncatula HOM05D000364 ORTHO05D000235 6.2e-06 54.3 36 66.7
SalBow3G3583 Salvia bowleyana HOM05D000364 ORTHO05D000235 6.2e-06 54.3 35 68.6
SEGI_33200 Sequoiadendron giganteum HOM05D000364 ORTHO05D000235 6.2e-06 54.3 70 44.3
FvH4_2g04900 Fragaria vesca HOM05D000364 ORTHO05D000235 8.2e-06 53.9 53 54.7
FAN20G2525 Fragaria x ananassa HOM05D000364 ORTHO05D000235 8.2e-06 53.9 53 54.7
Psat6g217320 Pisum sativum HOM05D000364 ORTHO05D000235 8.2e-06 53.9 55 47.3


User provided reference genes

Program Settings