Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.5e-255 884.4 437 100.0
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 6.5e-217 757.3 443 84.7
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.5e-216 756.1 420 87.1
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 5.5e-216 754.2 431 84.5
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.0e-213 745.7 420 86.4
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 8.6e-185 650.6 375 84.8
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.1e-182 643.7 437 72.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.6e-170 603.2 427 68.6
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 6.9e-166 587.8 429 72.3
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.4e-163 579.3 380 72.6
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.1e-161 571.6 424 65.6
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.1e-158 562.4 435 65.1
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 6.0e-154 548.1 434 64.5
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 2.3e-153 546.2 434 62.9
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 7.4e-152 541.2 419 64.4
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 9.6e-152 540.8 434 62.9
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 2.1e-151 539.7 491 57.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.8e-150 536.6 430 61.6
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.8e-150 536.6 425 60.9
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.0e-150 535.4 429 63.2
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 6.9e-150 534.6 376 67.8
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.6e-149 532.7 425 60.7
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.3e-148 530.4 425 60.5
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.9e-148 528.5 428 59.8
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 4.9e-148 528.5 426 60.1
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 6.4e-148 528.1 434 63.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 9.3e-147 524.2 467 58.9
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 4.6e-146 521.9 434 62.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 4.6e-146 521.9 433 61.9
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 3.0e-145 519.2 380 66.6
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 3.9e-145 518.8 435 61.4
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.5e-144 516.2 382 65.4
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 7.4e-144 514.6 438 59.6
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.7e-143 512.3 453 59.8
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 6.2e-143 511.5 430 59.8
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 3.1e-142 509.2 430 59.5
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.1e-142 509.2 433 59.6
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.0e-142 508.8 435 58.9
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 9.0e-142 507.7 430 59.5
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.2e-141 507.3 434 58.8
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 2.0e-141 506.5 434 59.9
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 7.6e-141 504.6 434 59.0
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 2.2e-140 503.1 444 59.2
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 4.9e-140 501.9 430 59.5
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.1e-139 500.7 430 58.8
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.9e-139 500.0 378 64.3
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 3.2e-139 499.2 434 60.1
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.2e-139 499.2 430 58.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.5e-139 498.4 430 58.4
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 5.5e-139 498.4 442 57.5
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.2e-138 497.3 430 59.8
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 2.3e-137 493.0 369 64.5
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 6.7e-137 491.5 445 57.5
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 6.7e-137 491.5 437 57.4
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 8.7e-137 491.1 437 58.6
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 8.7e-137 491.1 437 58.8
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 3.3e-136 489.2 438 57.5
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 9.7e-136 487.6 420 59.5
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.8e-135 486.1 432 56.9
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.8e-135 486.1 374 62.6
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 3.7e-135 485.7 420 59.8
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 6.3e-135 485.0 379 62.0
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.1e-134 482.6 418 57.9
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 6.9e-134 481.5 438 57.3
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.2e-133 480.7 378 64.0
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 3.4e-133 479.2 449 56.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 7.7e-133 478.0 433 58.4
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.7e-132 476.9 440 57.5
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.6e-130 470.3 499 48.7
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 6.1e-130 468.4 443 56.7
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 6.1e-130 468.4 443 56.7
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 6.1e-130 468.4 416 56.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.0e-129 467.6 440 56.6
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 1.4e-129 467.2 443 56.2
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 2.3e-129 466.5 510 50.4
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 3.0e-129 466.1 455 55.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 2.0e-128 463.4 443 56.2
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 5.7e-128 461.8 443 56.0
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 5.7e-128 461.8 455 54.9
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 7.4e-128 461.5 443 56.0
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.7e-127 460.3 377 60.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 4.8e-127 458.8 455 54.1
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 2.4e-126 456.4 432 55.3
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.4e-125 452.6 376 58.2
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 5.9e-125 451.8 435 52.9
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 3.9e-121 439.1 422 54.3
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 5.1e-121 438.7 446 51.8
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.7e-119 432.6 428 48.8
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 6.3e-119 431.8 442 53.4
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.1e-118 431.0 397 56.7
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.8e-113 413.7 378 55.8
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 2.2e-111 406.8 449 50.3
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.8e-110 403.7 399 53.1
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.6e-109 400.6 435 50.3
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.6e-109 400.6 426 48.4
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 4.5e-109 399.1 435 50.1
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 4.5e-109 399.1 429 52.9
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 1.7e-108 397.1 350 56.6
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 5.5e-107 392.1 444 48.4
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 9.4e-107 391.3 436 49.1
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.7e-106 389.8 445 48.1
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 4.7e-106 389.0 433 49.0
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.2e-104 384.4 384 53.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.4e-102 377.5 321 56.7
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 7.7e-101 371.7 431 48.3
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 4.1e-94 349.4 440 45.9
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.0e-92 344.7 449 44.5
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.9e-92 343.2 449 44.5
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.2e-91 339.3 452 40.7
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 3.6e-90 336.3 396 45.7
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.3e-89 333.6 447 43.6
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 2.6e-88 330.1 453 42.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.7e-88 328.9 464 40.3
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 8.3e-87 325.1 345 53.6
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.7e-84 317.4 433 41.1
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.9e-84 316.6 292 55.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.9e-84 316.6 450 40.2
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.9e-79 300.1 439 39.9
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.9e-79 300.1 468 41.7
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 7.8e-77 292.0 267 54.3
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 2.3e-76 290.4 349 47.0
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.6e-68 262.3 387 37.7
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 3.3e-51 206.8 428 30.6
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.8e-50 203.8 291 42.3
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 4.9e-31 139.8 130 49.2
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 1.0e-28 132.1 148 50.7
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-15 87.8 100 50.0
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 2.5e-11 74.3 52 75.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 2.8e-10 70.9 57 73.7
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.4e-09 68.6 58 70.7
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 6.9e-09 66.2 55 70.9
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.3e-07 62.0 54 66.7
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 3.8e-07 60.5 68 58.8
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 1.9e-06 58.2 43 62.8


User provided reference genes

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