Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 9.2e-40 166.4 82 100.0
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 3.0e-38 161.4 82 95.1
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 3.0e-38 161.4 82 95.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-38 161.4 82 95.1
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.1e-38 160.6 81 95.1
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-37 159.5 82 93.9
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.4e-35 152.5 82 90.2
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 2.4e-35 151.8 82 87.8
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.1e-35 151.4 82 87.8
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.1e-35 151.4 82 89.0
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 3.1e-35 151.4 82 89.0
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.3e-35 150.6 82 86.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 5.3e-35 150.6 82 86.6
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 5.3e-35 150.6 82 87.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 6.9e-35 150.2 82 87.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 6.9e-35 150.2 82 87.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.0e-35 149.8 82 86.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 9.0e-35 149.8 82 86.6
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 9.0e-35 149.8 82 85.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.2e-34 149.4 82 86.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.2e-34 149.4 82 86.6
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-34 149.4 82 89.0
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.5e-34 149.1 82 86.6
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.5e-34 149.1 82 85.4
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-34 149.1 82 84.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.0e-34 148.7 82 86.6
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.0e-34 148.7 82 87.8
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.4e-34 147.9 82 85.4
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.4e-34 147.9 82 85.4
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 3.4e-34 147.9 82 84.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 4.4e-34 147.5 82 85.4
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 4.4e-34 147.5 82 86.6
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 4.4e-34 147.5 82 86.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.4e-34 147.5 82 87.8
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 5.8e-34 147.1 82 86.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.8e-34 147.1 82 86.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 5.8e-34 147.1 82 85.4
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 7.6e-34 146.7 82 85.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 7.6e-34 146.7 82 85.4
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 84.1
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 86.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 84.1
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 86.6
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 82.9
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 9.9e-34 146.4 82 86.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 85.4
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 84.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 82.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 82.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 82.9
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 84.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.3e-33 146.0 82 86.6
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.7e-33 145.6 82 86.6
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.2e-33 145.2 82 82.9
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.9e-33 144.8 82 84.1
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.9e-33 144.8 82 84.1
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.9e-33 144.8 82 82.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.8e-33 144.4 82 82.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.8e-33 144.4 82 81.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 6.4e-33 143.7 82 82.9
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 6.4e-33 143.7 82 82.9
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 8.4e-33 143.3 82 84.1
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 8.4e-33 143.3 82 84.1
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.1e-32 142.9 82 82.9
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.1e-32 142.9 82 82.9
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.1e-32 142.9 82 80.5
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 80.5
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 84.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 79.3
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 81.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 81.7
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.4e-32 142.5 82 79.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.9e-32 142.1 82 79.3
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.9e-32 142.1 82 82.9
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-32 142.1 82 81.7
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.9e-32 142.1 82 80.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.9e-32 142.1 82 81.7
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 2.4e-32 141.7 82 82.9
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.2e-32 141.4 82 79.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.2e-32 141.0 82 80.5
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.4e-32 140.6 82 78.0
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 5.4e-32 140.6 82 78.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.4e-32 140.6 82 78.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 5.4e-32 140.6 82 78.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.4e-32 140.6 82 78.0
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.4e-32 140.6 82 80.5
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 5.4e-32 140.6 82 80.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.1e-32 140.2 82 78.0
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.1e-32 140.2 82 80.5
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 7.1e-32 140.2 82 82.9
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 9.3e-32 139.8 82 80.5
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 9.3e-32 139.8 82 80.5
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.2e-31 139.4 83 80.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.2e-31 139.4 82 76.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.2e-31 139.4 82 80.5
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-31 139.0 82 79.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.6e-31 139.0 82 76.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.7e-31 138.3 82 78.0
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.7e-31 138.3 82 79.3
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.7e-31 138.3 82 79.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.7e-31 138.3 82 78.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 3.5e-31 137.9 82 79.3
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.5e-31 137.9 82 79.3
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.6e-31 137.5 82 78.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 4.6e-31 137.5 82 79.3
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.0e-31 137.1 82 80.5
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 7.8e-31 136.7 82 75.6
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 1.0e-30 136.3 82 78.0
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.3e-30 136.0 83 78.3
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.3e-30 136.0 82 76.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.3e-30 136.0 82 79.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.3e-30 136.0 82 78.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.3e-30 136.0 82 78.0
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.3e-30 136.0 92 71.7
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.3e-30 135.2 81 82.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 3.0e-30 134.8 82 78.0
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 3.0e-30 134.8 82 78.0
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 3.0e-30 134.8 82 80.5
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.9e-30 134.4 82 74.4
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 5.1e-30 134.0 82 74.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 5.1e-30 134.0 82 75.6
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 5.1e-30 134.0 82 78.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 6.6e-30 133.7 81 75.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 8.7e-30 133.3 82 74.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.7e-30 133.3 79 78.5
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.1e-29 132.9 82 74.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.5e-29 132.5 82 74.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-29 131.3 78 83.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 7.3e-29 130.2 82 74.4
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.3e-28 129.4 82 74.4
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-28 128.6 82 73.2
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.8e-28 128.3 77 75.3
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.8e-27 125.6 66 92.4
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-27 125.2 78 76.9
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-27 125.2 78 76.9
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.0e-27 124.4 82 69.5
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 5.8e-26 120.6 72 81.9
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.8e-26 120.6 78 76.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-25 119.0 77 72.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 8.4e-25 116.7 65 84.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.5e-23 111.3 82 72.0
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.8e-22 109.0 72 70.8
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.0e-22 108.2 81 58.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-21 106.3 74 70.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.9e-21 105.5 77 59.7
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 6.2e-20 100.5 81 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 8.1e-20 100.1 75 56.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.1e-19 99.8 75 54.7
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.9e-16 89.0 50 82.0
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-15 86.3 82 56.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-15 86.3 82 56.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.3e-14 82.0 52 61.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 3.3e-13 78.2 53 67.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.7e-09 65.9 41 75.6
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.4e-09 63.5 32 87.5
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.5e-08 62.0 34 85.3


User provided reference genes

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