Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 1.2e-88 329.7 161 100.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.3e-65 251.9 194 68.6
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 6.6e-58 227.6 194 62.4
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 4.6e-43 178.3 122 73.8
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 4.0e-39 165.2 156 59.0
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.8e-37 158.7 152 56.6
CAN.G1363.5 Capsicum annuum HOM05D000222 ORTHO05D011666 4.3e-33 145.2 159 53.5
CAN.G756.29 Capsicum annuum HOM05D000222 ORTHO05D012343 2.2e-32 142.9 159 54.1
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.1e-31 140.6 116 62.9
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 7.6e-30 134.4 115 54.8
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 1.1e-28 130.6 112 54.5
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 1.1e-25 120.6 110 55.5
CAN.G149.44 Capsicum annuum HOM05D000475 ORTHO05D011666 1.1e-25 120.6 74 78.4
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 7.4e-25 117.9 119 49.6
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 1.3e-24 117.1 121 46.3
Os01g0165200 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 1.3e-24 117.1 111 50.5
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.3e-24 117.1 68 80.9
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 4.8e-24 115.2 114 48.2
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 1.1e-23 114.0 127 47.2
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 2.4e-23 112.8 110 50.0
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 2.4e-23 112.8 130 47.7
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 3.1e-23 112.5 68 77.9
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.5e-22 110.2 65 80.0
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 5.9e-22 108.2 98 48.0
Medtr7g070320 Medicago truncatula HOM05D000475 ORTHO05D000343 5.9e-22 108.2 114 48.2
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 8.5e-21 104.4 156 37.2
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 8.5e-21 104.4 138 40.6
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 8.5e-21 104.4 120 44.2
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 3.2e-20 102.4 111 46.8
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 7.2e-20 101.3 96 51.0
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 6.1e-19 98.2 96 52.1
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.8e-18 96.7 116 44.8
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 1.8e-18 96.7 113 42.5
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 3.0e-18 95.9 112 41.1
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 3.0e-18 95.9 113 41.6
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.9e-18 95.5 64 73.4
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 5.1e-18 95.1 116 44.8
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 1.5e-17 93.6 113 42.5
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 5.7e-17 91.7 131 40.5
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 9.7e-17 90.9 116 44.0
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 1.7e-16 90.1 116 44.0
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 1.7e-16 90.1 116 44.0
TPR.G25494 Trifolium pratense HOM05D000475 ORTHO05D011666 2.8e-16 89.4 110 40.9
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 3.7e-16 89.0 116 43.1
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 3.7e-16 89.0 116 43.1
Peaxi162Scf00744g00336 Petunia axillaris HOM05D000475 ORTHO05D000343 3.7e-16 89.0 59 71.2
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 4.8e-16 88.6 88 47.7
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 4.8e-16 88.6 108 40.7
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 1.4e-15 87.0 102 44.1
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 1.4e-15 87.0 102 42.2
CAN.G1288.8 Capsicum annuum HOM05D000475 ORTHO05D000343 2.6e-14 82.8 92 46.7
Sed0008589 Sechium edule HOM05D000475 ORTHO05D011666 2.6e-14 82.8 93 41.9
Phvul.010G010600 Phaseolus vulgaris HOM05D000475 ORTHO05D011666 4.5e-14 82.0 76 51.3
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 1.3e-13 80.5 116 37.9
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 1.3e-13 80.5 121 35.5
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 2.9e-13 79.3 116 39.7
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 3.8e-13 79.0 112 34.8
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 6.5e-13 78.2 117 37.6
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 6.5e-13 78.2 112 37.5
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 6.5e-13 78.2 113 37.2
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 8.5e-13 77.8 116 37.9
Sopen10g027970 Solanum pennellii HOM05D000475 ORTHO05D000343 8.5e-13 77.8 69 52.2
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.5e-12 76.3 57 61.4
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 3.2e-12 75.9 91 40.7
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 4.2e-12 75.5 56 66.1
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 5.5e-12 75.1 116 38.8
unitig_62.g23470 Utricularia gibba HOM05D000475 ORTHO05D000343 7.2e-12 74.7 114 36.0
CAN.G257.37 Capsicum annuum HOM05D000475 ORTHO05D011666 1.2e-11 73.9 46 69.6
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 1.2e-11 73.9 56 57.1
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.6e-11 73.6 52 59.6
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 1.6e-11 73.6 53 64.2
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 2.7e-11 72.8 55 60.0
Nitab4.5_0003850g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.7e-11 72.8 65 52.3
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 3.6e-11 72.4 87 42.5
Glyma.01G126501 Glycine max HOM05D015228 ORTHO05D011666 4.7e-11 72.0 134 32.1
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.0e-10 70.9 109 34.9
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.0e-10 70.9 56 64.3
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.4e-10 70.5 52 57.7
Solyc10g076340.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.4e-10 70.5 66 48.5
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 1.8e-10 70.1 49 65.3
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 1.8e-10 70.1 116 35.3
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 2.3e-10 69.7 50 60.0
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 3.9e-10 68.9 54 55.6
CANSAT35G0609 Cannabis sativa HOM05D000475 ORTHO05D000343 3.9e-10 68.9 49 65.3
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 3.9e-10 68.9 48 62.5
Oeu038716.1 Olea europaea HOM05D000475 ORTHO05D000343 6.7e-10 68.2 61 57.4
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 1.5e-09 67.0 45 66.7
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.3e-09 65.9 51 56.9
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.3e-09 65.9 51 56.9
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 5.7e-09 65.1 48 60.4
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 7.4e-09 64.7 49 59.2
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 7.4e-09 64.7 51 56.9
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 7.4e-09 64.7 51 56.9
Haze_21089 Corylus avellana HOM05D000475 ORTHO05D000343 9.7e-09 64.3 61 50.8
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 1.3e-08 63.9 43 74.4
HanXRQChr16g0510201 Helianthus annuus HOM05D000475 ORTHO05D000343 1.3e-08 63.9 54 55.6
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.7e-08 63.5 63 50.8
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.7e-08 63.5 56 50.0
TPR.G21356 Trifolium pratense HOM05D000475 ORTHO05D011666 1.7e-08 63.5 103 37.9
TPR.G40566 Trifolium pratense HOM05D000475 ORTHO05D011666 1.7e-08 63.5 112 33.9
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 2.2e-08 63.2 56 57.1
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 2.8e-08 62.8 49 55.1
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 4.8e-08 62.0 50 54.0
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 4.8e-08 62.0 53 54.7
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 6.3e-08 61.6 64 42.2
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 6.3e-08 61.6 56 50.0
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 6.3e-08 61.6 56 53.6
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 8.2e-08 61.2 63 47.6
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.2e-08 61.2 94 34.0
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.1e-07 60.8 64 46.9
FvH4_6g10591 Fragaria vesca HOM05D000475 ORTHO05D000343 1.1e-07 60.8 47 59.6
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 1.1e-07 60.8 50 52.0
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 1.4e-07 60.5 47 55.3
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 1.8e-07 60.1 49 55.1
PSO017G1695 Papaver somniferum HOM05D000475 ORTHO05D000343 1.8e-07 60.1 53 50.9
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 2.4e-07 59.7 51 52.9
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 2.4e-07 59.7 50 52.0
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-07 59.3 53 47.2
MBI15_g28858_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 3.1e-07 59.3 45 55.6
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 3.1e-07 59.3 60 50.0
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 3.1e-07 59.3 49 57.1
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 4.1e-07 58.9 50 54.0
PSO541G4842 Papaver somniferum HOM05D000475 ORTHO05D000343 4.1e-07 58.9 94 30.9
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 5.3e-07 58.5 48 52.1
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 5.3e-07 58.5 49 53.1
Sabra16G0130800 Salix brachista HOM05D000475 ORTHO05D000343 7.0e-07 58.2 49 55.1
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 7.0e-07 58.2 49 55.1
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 7.0e-07 58.2 51 54.9
EL10Ac2g04912 Beta vulgaris HOM05D000475 ORTHO05D000343 9.1e-07 57.8 50 56.0
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 9.1e-07 57.8 48 52.1
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.2e-06 57.4 49 57.1
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 1.2e-06 57.4 63 47.6
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.0e-06 56.6 50 52.0
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 2.0e-06 56.6 49 53.1
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 2.6e-06 56.2 49 65.3
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 2.6e-06 56.2 48 50.0
Sc11g0005450 Simmondsia chinensis HOM05D000475 ORTHO05D011666 3.5e-06 55.8 59 44.1
Solyc06g050600.4 Solanum lycopersicum HOM05D000475 ORTHO05D011666 3.5e-06 55.8 53 49.1
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 3.5e-06 55.8 44 54.5
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 4.5e-06 55.5 47 55.3
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 5.9e-06 55.1 50 52.0
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 7.7e-06 54.7 50 50.0
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 7.7e-06 54.7 54 42.6
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 7.7e-06 54.7 51 52.9
Os05g0164900 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 7.7e-06 54.7 55 47.3


User provided reference genes

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