Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.2e-117 425.6 210 100.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 8.0e-104 380.6 214 90.2
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.0e-103 380.2 214 90.2
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.7e-102 374.4 214 89.3
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.8e-92 342.8 216 82.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-91 339.3 216 81.5
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.2e-80 303.5 210 76.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.6e-72 275.4 220 63.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 6.2e-72 274.6 215 63.7
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 9.9e-70 267.3 221 63.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-69 266.9 220 63.2
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.2e-69 266.2 213 62.0
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.7e-69 265.4 215 61.9
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 6.4e-69 264.6 211 64.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 8.3e-69 264.2 220 62.3
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.1e-68 263.8 221 62.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.9e-68 263.1 221 62.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.2e-68 262.3 220 61.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.1e-68 261.9 223 60.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.4e-68 261.5 220 61.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 5.4e-68 261.5 224 59.8
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 9.2e-68 260.8 222 61.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.2e-67 260.4 217 61.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.1e-67 259.6 220 61.8
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.7e-67 259.2 218 61.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.5e-67 258.8 220 58.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 6.0e-67 258.1 220 61.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.8e-67 257.7 218 61.0
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.0e-66 257.3 206 60.7
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.3e-66 256.9 211 61.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.7e-66 256.5 223 59.6
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.0e-66 255.8 217 60.8
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.9e-66 255.4 223 59.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.9e-66 255.4 223 59.6
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 3.9e-66 255.4 218 60.1
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.9e-66 255.4 211 61.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 5.1e-66 255.0 218 61.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 6.6e-66 254.6 221 59.7
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 8.6e-66 254.2 215 61.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 8.6e-66 254.2 211 58.3
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.6e-66 254.2 223 59.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 8.6e-66 254.2 223 59.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 8.6e-66 254.2 217 60.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.5e-65 253.4 211 63.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.5e-65 253.4 223 58.7
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.5e-65 253.4 222 59.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.5e-65 253.4 221 61.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.3e-65 252.3 216 59.3
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.6e-65 250.8 211 61.6
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.2e-64 250.4 213 60.6
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.1e-64 249.6 219 59.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.8e-64 249.2 219 59.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.2e-64 248.1 221 59.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 6.2e-64 248.1 213 59.2
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.1e-63 247.3 219 58.9
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.8e-63 246.5 216 59.3
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.4e-63 246.1 226 58.0
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-63 245.7 219 58.4
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.1e-63 245.7 219 59.4
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.0e-63 245.4 216 57.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.0e-63 245.4 219 58.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-62 243.8 218 59.2
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.2e-62 243.8 230 56.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.4e-62 242.3 213 60.6
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 3.4e-62 242.3 223 57.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.7e-61 240.0 211 58.3
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.9e-61 238.4 212 58.0
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.4e-60 236.9 221 57.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.4e-60 236.9 209 58.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.9e-60 236.5 209 59.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.4e-60 236.1 214 57.5
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.2e-60 235.7 210 58.6
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 4.2e-60 235.3 208 57.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.6e-59 233.4 210 57.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.1e-59 233.0 205 58.5
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.5e-59 232.3 211 57.3
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.5e-59 232.3 211 56.4
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.6e-59 231.9 215 54.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 7.8e-59 231.1 209 56.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.8e-59 231.1 214 57.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.0e-58 230.7 214 57.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-58 230.3 206 58.7
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.3e-58 230.3 218 57.3
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.3e-58 230.3 212 56.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.7e-58 229.9 222 55.0
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.0e-58 229.2 208 56.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.1e-58 228.4 221 55.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.6e-58 228.0 212 57.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.7e-58 227.6 220 54.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-57 227.3 208 56.2
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 7.3e-57 224.6 207 56.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.3e-57 224.6 213 55.9
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.3e-56 223.8 219 52.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.1e-56 223.0 206 54.9
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.8e-56 221.9 205 57.6
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.2e-56 221.5 206 56.8
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.2e-56 221.5 206 56.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.4e-55 220.3 206 55.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.4e-55 220.3 224 53.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.8e-55 219.9 215 51.2
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.8e-55 219.9 214 53.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.8e-55 219.9 226 54.9
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.0e-55 218.8 213 54.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 5.3e-55 218.4 207 55.6
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-54 216.9 207 55.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.4e-54 215.7 207 54.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 4.4e-54 215.3 207 54.6
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.4e-54 215.3 207 54.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.4e-54 215.3 207 54.6
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 4.4e-54 215.3 207 54.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.6e-54 214.5 216 54.2
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.2e-53 213.0 221 49.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.2e-53 213.0 214 51.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.9e-52 209.9 209 52.6
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.4e-52 209.5 231 47.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.4e-52 209.5 216 51.9
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.2e-52 209.1 205 52.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.2e-52 208.8 216 50.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.7e-51 206.1 238 49.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.5e-51 205.7 221 50.7
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-50 204.1 205 53.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-50 203.4 207 53.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.7e-50 203.4 207 54.1
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 3.0e-50 202.6 207 52.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 3.0e-50 202.6 188 54.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.6e-50 201.4 162 62.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.6e-50 201.4 136 68.4
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.5e-49 200.3 195 54.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.9e-49 199.9 188 56.4
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 5.6e-49 198.4 220 47.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.6e-48 196.8 182 55.5
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 6.2e-48 194.9 185 51.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 6.2e-48 194.9 218 51.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 8.1e-48 194.5 220 50.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 6.9e-47 191.4 211 49.8
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 9.0e-47 191.0 229 48.9
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 9.0e-47 191.0 223 49.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.2e-46 190.7 223 48.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.5e-46 190.3 205 50.7
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 9.9e-46 187.6 211 47.4
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.3e-45 187.2 146 58.2
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-45 186.4 145 60.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.8e-45 185.7 237 47.3
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 4.9e-45 185.3 181 53.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.4e-45 184.9 220 48.2
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.4e-45 184.5 229 47.6
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.4e-44 183.0 218 47.2
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-44 183.0 158 58.2
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.7e-43 179.5 131 61.1
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.5e-43 179.1 217 46.5
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 6.0e-43 178.3 206 46.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.0e-43 178.3 158 53.2
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.0e-43 178.3 158 53.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-42 177.2 208 50.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 4.3e-41 172.2 150 52.0
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.3e-40 170.6 159 54.7
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.1e-40 167.9 220 45.5
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-39 167.5 208 48.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.0e-38 163.3 149 59.7
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.3e-37 160.6 126 57.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.1e-36 157.5 122 59.0
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.4e-36 157.1 258 38.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-36 157.1 126 54.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.3e-36 154.5 129 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.0e-34 151.0 129 52.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.3e-34 149.8 135 55.6
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.0e-34 149.4 122 56.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-32 144.1 205 43.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 6.9e-31 138.3 117 51.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 6.9e-31 138.3 106 57.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 3.4e-30 136.0 221 40.7
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 3.4e-30 136.0 221 40.7
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.5e-28 128.6 76 77.6
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.6e-24 117.1 207 37.7
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.8e-24 116.3 88 63.6
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-17 93.2 57 73.7
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.0e-14 83.6 111 46.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 7.7e-14 81.6 54 70.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.7e-13 80.5 48 72.9
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 1.3e-08 64.3 124 37.1


User provided reference genes

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