Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.1e-110 403.3 200 100.0
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 6.7e-68 261.2 155 82.6
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.8e-65 253.1 178 71.9
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.2e-55 219.5 154 71.4
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.9e-54 216.5 154 70.8
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 4.4e-51 205.3 174 63.8
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 3.3e-46 189.1 188 54.8
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 1.7e-42 176.8 193 53.4
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.3e-39 167.2 184 50.5
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 2.3e-39 166.4 184 50.0
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.1e-38 164.1 188 52.7
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 2.1e-37 159.8 186 50.5
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 5.2e-36 155.2 157 54.8
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 2.2e-34 149.8 179 47.5
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 8.3e-34 147.9 170 50.6
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 8.3e-34 147.9 149 48.3
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 3.2e-33 146.0 192 45.8
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 3.2e-33 146.0 192 45.3
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 7.0e-33 144.8 183 48.1
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 1.6e-32 143.7 189 48.7
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 1.0e-31 141.0 175 50.3
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.3e-31 140.6 165 49.7
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 1.7e-31 140.2 169 48.5
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 5.0e-31 138.7 183 45.4
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 5.0e-31 138.7 182 47.3
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.9e-30 136.7 183 46.4
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 7.3e-30 134.8 182 41.8
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.2e-29 134.0 160 46.2
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 2.3e-28 129.8 174 44.8
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 4.0e-28 129.0 174 44.8
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 6.8e-28 128.3 182 40.7
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 6.8e-28 128.3 182 41.2
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 8.9e-28 127.9 156 48.7
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 1.2e-27 127.5 154 48.7
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.2e-27 127.5 197 40.6
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.5e-27 127.1 163 45.4
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.6e-27 126.3 204 40.2
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 4.4e-27 125.6 189 41.3
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 1.3e-26 124.0 187 44.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.7e-26 123.6 179 39.7
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 2.4e-25 119.8 180 41.1
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 7.0e-25 118.2 175 44.0
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 7.0e-25 118.2 129 51.2
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 1.6e-24 117.1 181 43.6
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 3.5e-24 115.9 160 44.4
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 3.5e-24 115.9 165 46.7
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.0e-23 114.4 157 43.9
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 1.7e-23 113.6 162 42.6
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.3e-23 113.2 161 44.1
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 3.9e-23 112.5 178 41.6
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 5.0e-23 112.1 171 40.4
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 6.6e-23 111.7 187 38.5
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 6.6e-23 111.7 162 42.6
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 6.6e-23 111.7 157 45.2
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 8.6e-23 111.3 172 41.3
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 3.3e-22 109.4 197 36.5
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 4.3e-22 109.0 177 40.1
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 4.3e-22 109.0 151 43.0
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 1.6e-21 107.1 189 38.1
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 2.1e-21 106.7 168 41.1
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.1e-20 104.4 183 39.9
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 1.4e-20 104.0 177 39.5
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 2.3e-20 103.2 191 41.4
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 5.2e-20 102.1 181 38.1
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 6.8e-20 101.7 190 35.8
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 8.9e-20 101.3 172 41.3
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 3.4e-19 99.4 128 43.8
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 5.8e-19 98.6 147 41.5
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 7.5e-19 98.2 175 38.9
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 9.9e-19 97.8 127 45.7
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 8.3e-18 94.7 154 40.9
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 1.2e-16 90.9 175 38.3
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 2.1e-16 90.1 130 38.5
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 1.3e-15 87.4 155 37.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.7e-15 87.0 145 38.6
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 2.1e-13 80.1 84 51.2
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.4e-12 76.6 75 52.0
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 4.0e-12 75.9 83 49.4
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 1.1e-09 67.8 183 32.8
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 1.1e-09 67.8 168 30.4
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 1.4e-09 67.4 160 30.6
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 1.4e-09 67.4 160 30.6
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 1.9e-09 67.0 156 29.5
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 2.4e-09 66.6 160 28.8
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 2.4e-09 66.6 160 28.8
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 2.4e-09 66.6 92 39.1
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 3.2e-09 66.2 209 28.7
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 5.4e-09 65.5 153 31.4
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 5.4e-09 65.5 148 31.8
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 5.4e-09 65.5 152 32.2
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 5.4e-09 65.5 157 31.8
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 7.1e-09 65.1 188 31.9
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 7.1e-09 65.1 178 32.0
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 7.1e-09 65.1 178 32.0
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.2e-08 64.3 102 41.2
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.2e-08 64.3 201 30.8
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 1.2e-08 64.3 163 31.9
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 2.1e-08 63.5 169 31.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.1e-08 63.5 138 32.6
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 2.1e-08 63.5 75 45.3
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 2.1e-08 63.5 158 31.6
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 2.7e-08 63.2 168 32.1
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 3.5e-08 62.8 165 29.1
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 3.5e-08 62.8 148 31.1
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 4.6e-08 62.4 164 30.5
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 6.0e-08 62.0 159 30.2
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 6.0e-08 62.0 159 30.2
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 6.0e-08 62.0 179 31.8
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 7.8e-08 61.6 125 33.6
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 7.8e-08 61.6 50 58.0
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 1.7e-07 60.5 202 28.7
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 1.7e-07 60.5 162 29.6
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 1.7e-07 60.5 163 31.3
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 2.3e-07 60.1 171 28.7
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 2.3e-07 60.1 166 30.7
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.3e-07 60.1 163 31.3
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 3.0e-07 59.7 158 30.4
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 3.0e-07 59.7 153 28.8
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 3.9e-07 59.3 162 29.6
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 3.9e-07 59.3 168 29.8
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 3.9e-07 59.3 143 32.9
CiPaw.16G001200 Carya illinoinensis HOM05D000727 ORTHO05D000541 5.1e-07 58.9 184 26.6
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 5.1e-07 58.9 162 31.5
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 8.7e-07 58.2 165 28.5
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 8.7e-07 58.2 171 28.7
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 8.7e-07 58.2 163 28.8
RcHm_v2.0_Chr4g0447101 Rosa chinensis HOM05D000727 ORTHO05D000541 8.7e-07 58.2 170 28.2
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 8.7e-07 58.2 144 29.2
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 8.7e-07 58.2 148 29.7
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.1e-06 57.8 180 28.3
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 1.1e-06 57.8 188 26.6
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.1e-06 57.8 167 28.1
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.1e-06 57.8 175 28.6
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.1e-06 57.8 184 29.3
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.5e-06 57.4 152 30.3
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.5e-06 57.4 158 30.4
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.5e-06 57.4 141 31.9
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 1.9e-06 57.0 170 28.8
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 1.9e-06 57.0 173 27.2
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.5e-06 56.6 178 29.2
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 2.5e-06 56.6 141 29.8
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 3.3e-06 56.2 151 30.5
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 3.3e-06 56.2 166 29.5
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 3.3e-06 56.2 185 25.9
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 3.3e-06 56.2 185 25.9
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 3.3e-06 56.2 166 28.3
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 4.3e-06 55.8 190 27.9
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 4.3e-06 55.8 166 29.5
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 5.6e-06 55.5 143 30.1
Ca_11274_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 5.6e-06 55.5 148 27.7
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 5.6e-06 55.5 162 30.9
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 5.6e-06 55.5 185 25.9
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 5.6e-06 55.5 167 29.3
arahy.Tifrunner.gnm1.ann1.Z3R5C5 Arachis hypogaea HOM05D000727 ORTHO05D000541 7.3e-06 55.1 149 30.2
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 7.3e-06 55.1 181 28.2
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 7.3e-06 55.1 141 29.1
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 7.3e-06 55.1 162 27.8
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 9.6e-06 54.7 155 31.0
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 9.6e-06 54.7 53 54.7
CANSAT78G1765 Cannabis sativa HOM05D000727 ORTHO05D000541 9.6e-06 54.7 178 27.0
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 9.6e-06 54.7 152 31.6
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 9.6e-06 54.7 176 26.7


User provided reference genes

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