Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G59.25 Capsicum annuum HOM05D001502 ORTHO05D002950 8.2e-58 226.9 117 100.0
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 9.8e-27 123.6 95 70.5
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-25 119.0 91 69.2
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-25 119.0 91 69.2
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 3.2e-25 118.6 91 69.2
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 2.7e-24 115.5 91 67.0
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 3.5e-24 115.2 91 68.1
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 3.5e-24 115.2 91 68.1
CAN.G827.4 Capsicum annuum HOM05D001502 ORTHO05D002950 1.0e-23 113.6 96 64.6
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.1e-22 110.2 97 59.8
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.1e-22 110.2 97 59.8
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.2e-21 106.7 97 57.7
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.2e-21 106.7 91 61.5
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 2.1e-21 105.9 78 74.4
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 9.2e-17 90.5 89 56.2
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 2.5e-14 82.4 101 46.5
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 4.3e-14 81.6 96 53.1
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 1.6e-13 79.7 100 47.0
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 2.1e-13 79.3 95 50.5
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 8.1e-13 77.4 100 45.0
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.8e-12 76.3 100 45.0
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.3e-12 75.9 95 49.5
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.3e-12 75.9 95 49.5
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 2.3e-12 75.9 101 44.6
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 3.1e-12 75.5 95 48.4
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.2e-11 73.6 90 46.7
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.5e-11 73.2 110 41.8
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.5e-11 73.2 110 41.8
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.5e-11 73.2 110 41.8
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.6e-11 72.4 100 45.0
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 4.4e-11 71.6 101 46.5
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 4.4e-11 71.6 95 47.4
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 4.4e-11 71.6 93 45.2
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 4.4e-11 71.6 100 44.0
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 4.4e-11 71.6 95 47.4
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 5.8e-11 71.2 108 41.7
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 5.8e-11 71.2 108 41.7
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 7.5e-11 70.9 94 44.7
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.7e-10 69.7 103 42.7
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.7e-10 69.7 95 45.3
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 2.2e-10 69.3 95 48.4
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 2.2e-10 69.3 101 45.5
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 2.9e-10 68.9 95 42.1
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 4.9e-10 68.2 103 42.7
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.1e-09 67.0 95 44.2
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.4e-09 66.6 102 41.2
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.9e-09 66.2 95 42.1
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 2.4e-09 65.9 103 42.7
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.4e-09 65.9 103 41.7
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 2.4e-09 65.9 90 45.6
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 4.1e-09 65.1 100 42.0
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 4.1e-09 65.1 92 41.3
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.1e-09 65.1 95 43.2
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 4.1e-09 65.1 94 46.8
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 5.4e-09 64.7 102 39.2
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 7.1e-09 64.3 102 42.2
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.6e-08 63.2 98 41.8
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 1.6e-08 63.2 102 42.2
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.1e-08 62.8 94 46.8
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.1e-08 62.8 95 40.0
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 2.1e-08 62.8 99 41.4
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 2.7e-08 62.4 95 41.1
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 2.7e-08 62.4 102 35.3
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 2.7e-08 62.4 95 40.0
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 3.5e-08 62.0 102 40.2
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 6.0e-08 61.2 95 40.0
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 6.0e-08 61.2 96 42.7
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 6.0e-08 61.2 103 36.9
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 6.0e-08 61.2 102 40.2
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.7e-07 59.7 93 41.9
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 2.3e-07 59.3 94 42.6
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 2.3e-07 59.3 101 38.6
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 3.0e-07 58.9 99 37.4
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 3.0e-07 58.9 93 43.0
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 3.9e-07 58.5 100 39.0
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 5.1e-07 58.2 105 38.1
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 6.6e-07 57.8 103 37.9
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 8.6e-07 57.4 103 36.9
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 1.1e-06 57.0 95 44.2
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.5e-06 56.6 89 39.3
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 1.5e-06 56.6 92 37.0
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 1.9e-06 56.2 103 37.9
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 1.9e-06 56.2 103 37.9
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 1.9e-06 56.2 94 41.5
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.9e-06 56.2 96 43.8
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 2.5e-06 55.8 101 36.6
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.5e-06 55.8 91 36.3
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 2.5e-06 55.8 92 39.1
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 3.3e-06 55.5 101 37.6
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 4.3e-06 55.1 102 36.3
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 4.3e-06 55.1 91 37.4
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 4.3e-06 55.1 103 34.0
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 5.6e-06 54.7 102 36.3
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 9.5e-06 53.9 91 37.4


User provided reference genes

Program Settings