Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 4.9e-112 407.9 219 100.0
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 8.6e-109 397.1 219 96.8
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 3.4e-105 385.2 217 94.0
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.3e-104 383.3 217 92.6
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 3.9e-101 371.7 207 94.7
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 5.1e-101 371.3 207 94.7
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.2e-91 340.1 218 82.1
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.1e-90 337.0 218 80.3
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.8e-90 336.3 218 82.6
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 1.8e-90 336.3 218 82.1
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 4.0e-90 335.1 218 80.7
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 8.9e-90 334.0 218 80.7
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 8.9e-90 334.0 217 78.8
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 1.2e-89 333.6 218 80.7
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.0e-89 332.8 218 81.7
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.0e-89 332.8 217 78.3
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 2.6e-89 332.4 217 79.7
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 5.8e-89 331.3 217 77.4
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.3e-88 330.1 218 80.7
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.2e-88 329.3 218 80.3
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.2e-88 329.3 218 80.7
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.2e-88 329.3 218 80.7
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 2.9e-88 328.9 218 80.7
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 4.9e-88 328.2 217 78.3
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 2.4e-87 325.9 218 78.0
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 2.4e-87 325.9 218 79.4
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.4e-87 325.9 218 77.1
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.4e-87 325.9 218 79.8
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 3.2e-87 325.5 218 78.4
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 7.1e-87 324.3 217 78.8
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 9.3e-87 323.9 217 77.0
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 9.3e-87 323.9 218 78.9
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 9.3e-87 323.9 218 76.1
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.2e-86 323.6 218 76.6
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 2.1e-86 322.8 218 78.9
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.7e-86 322.4 216 77.3
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.0e-85 320.5 218 77.1
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 2.3e-85 319.3 217 75.6
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.3e-85 319.3 221 78.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 2.3e-85 319.3 218 75.2
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 3.0e-85 318.9 218 76.6
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 3.0e-85 318.9 217 76.5
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 6.6e-85 317.8 217 78.3
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 6.6e-85 317.8 218 76.6
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 6.6e-85 317.8 217 77.9
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.1e-84 317.0 218 74.8
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.1e-84 317.0 218 77.1
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.1e-84 317.0 217 77.4
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.5e-84 316.6 229 74.2
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 2.5e-84 315.8 218 74.3
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 3.3e-84 315.5 217 76.5
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 3.3e-84 315.5 218 78.0
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 4.3e-84 315.1 218 76.1
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 5.6e-84 314.7 218 77.1
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 5.6e-84 314.7 218 75.7
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 7.3e-84 314.3 217 77.4
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 9.6e-84 313.9 229 73.8
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 9.6e-84 313.9 258 68.2
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 9.6e-84 313.9 217 75.6
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.3e-83 313.5 217 77.4
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.6e-83 313.2 217 77.4
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.6e-83 313.2 217 77.4
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.1e-83 312.8 217 77.4
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 2.8e-83 312.4 218 74.8
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 2.8e-83 312.4 218 75.2
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 3.6e-83 312.0 217 76.0
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 6.2e-83 311.2 218 77.1
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 8.1e-83 310.8 230 73.5
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 8.1e-83 310.8 218 77.1
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 1.1e-82 310.5 218 74.3
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 2.4e-82 309.3 218 76.6
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.1e-82 308.9 218 76.1
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.1e-82 308.9 218 76.1
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 4.0e-82 308.5 217 75.6
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 5.3e-82 308.1 218 75.7
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 5.3e-82 308.1 218 76.6
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 9.0e-82 307.4 205 78.5
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.4e-81 305.4 217 75.1
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 4.5e-81 305.1 217 71.0
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 1.3e-80 303.5 217 74.2
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 1.7e-80 303.1 232 72.4
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 3.8e-80 302.0 203 76.8
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.9e-80 301.6 218 72.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 4.9e-80 301.6 219 70.3
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 8.4e-80 300.8 220 71.4
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.1e-79 300.4 220 73.6
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.1e-79 300.4 219 70.8
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 2.4e-79 299.3 202 76.7
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.6e-78 296.6 218 73.4
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 4.6e-78 295.0 218 69.7
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.9e-78 294.3 217 71.0
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 1.0e-77 293.9 201 76.6
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.7e-77 293.1 204 75.0
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 3.0e-77 292.4 251 64.9
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 3.9e-77 292.0 219 71.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 3.9e-77 292.0 218 73.4
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 5.1e-77 291.6 220 69.5
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 1.1e-76 290.4 204 74.0
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 1.1e-76 290.4 217 71.4
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 2.5e-76 289.3 218 67.0
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.3e-76 288.9 219 70.3
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 4.3e-76 288.5 219 69.4
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 4.3e-76 288.5 218 71.6
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 4.3e-76 288.5 219 70.3
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.6e-76 288.1 217 68.2
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 9.6e-76 287.3 218 68.8
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 9.6e-76 287.3 218 66.1
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.3e-75 287.0 219 69.9
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 2.1e-75 286.2 218 65.1
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 2.8e-75 285.8 219 70.3
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 2.8e-75 285.8 218 71.6
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 4.8e-75 285.0 219 70.8
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 6.2e-75 284.6 218 70.6
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 6.2e-75 284.6 218 70.6
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 6.2e-75 284.6 219 70.8
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 1.8e-74 283.1 218 69.7
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 1.8e-74 283.1 218 69.7
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 3.1e-74 282.3 218 70.2
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.5e-73 280.0 219 68.9
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 3.4e-73 278.9 206 66.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.1e-68 263.8 202 72.3
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 1.3e-67 260.4 218 64.2
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.7e-67 258.8 187 72.7
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 8.1e-67 257.7 195 69.7
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.8e-66 256.5 219 60.7
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 5.8e-65 251.5 193 72.5
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 9.3e-63 244.2 187 71.1
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 1.6e-62 243.4 162 78.4
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.0e-61 240.7 169 75.1
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 2.3e-61 239.6 224 58.5
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 3.0e-61 239.2 218 60.1
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 3.0e-61 239.2 176 71.6
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-60 236.9 219 59.8
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.1e-58 230.7 162 72.2
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 4.1e-58 228.8 217 58.1
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 2.9e-56 222.6 181 66.9
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.3e-51 207.2 141 78.0
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 4.1e-50 202.2 225 50.7
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 4.6e-46 188.7 224 44.6
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.4e-42 176.4 157 63.7
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 6.9e-42 174.9 180 58.9
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.0e-41 173.3 125 74.4
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 5.5e-39 165.2 113 74.3
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.4e-34 150.6 117 65.0
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 6.1e-30 135.2 219 38.8
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.1e-26 122.9 77 80.5
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 3.5e-25 119.4 134 53.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 5.7e-20 102.1 233 32.2
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.2e-19 100.1 63 81.0
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.1e-18 97.8 103 54.4
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 9.2e-10 68.2 45 77.8
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 1.3e-08 64.3 59 55.9
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 1.3e-08 64.3 223 30.0
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 2.9e-08 63.2 191 28.3
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 2.9e-08 63.2 181 30.4
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 6.6e-08 62.0 191 24.6
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 1.1e-07 61.2 181 29.3
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 1.5e-07 60.8 190 26.8
AagrBONN_evm.TU.Sc2ySwM_344.935 Anthoceros agrestis HOM05D000764 ORTHO05D002819 2.5e-07 60.1 218 26.6
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 2.5e-07 60.1 220 25.9
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 3.3e-07 59.7 191 27.7
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 5.6e-07 58.9 220 25.9
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 5.6e-07 58.9 220 25.5
Mapoly0125s0036 Marchantia polymorpha HOM05D000764 ORTHO05D002819 1.2e-06 57.8 179 27.4
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 1.6e-06 57.4 219 26.5
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 1.6e-06 57.4 178 28.1
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 2.8e-06 56.6 181 28.2
Manes.01G022900 Manihot esculenta HOM05D000764 ORTHO05D002819 3.6e-06 56.2 179 27.9
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 4.7e-06 55.8 217 25.3
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 4.7e-06 55.8 174 27.0
Nitab4.5_0004342g0070 Nicotiana tabacum HOM05D000764 ORTHO05D002819 6.1e-06 55.5 220 25.0
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 6.1e-06 55.5 191 27.7
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 8.0e-06 55.1 179 25.1
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 8.0e-06 55.1 179 27.4
Sabra12G0042300 Salix brachista HOM05D000764 ORTHO05D002819 8.0e-06 55.1 191 26.2


User provided reference genes

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