Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 1.5e-120 438.0 222 100.0
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 2.6e-96 357.5 220 81.4
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 2.6e-96 357.5 220 81.4
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 1.6e-88 331.6 223 74.0
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 7.5e-59 233.0 223 57.8
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 4.9e-58 230.3 221 58.8
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 2.3e-55 221.5 191 60.7
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.3e-55 221.5 217 56.2
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 4.3e-54 217.2 219 55.3
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 7.3e-54 216.5 220 54.1
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 8.0e-53 213.0 224 56.2
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 4.0e-52 210.7 220 57.3
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 6.8e-52 209.9 217 54.8
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.2e-51 209.1 222 53.2
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.6e-51 208.0 224 54.5
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 3.4e-51 207.6 222 52.7
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 3.4e-51 207.6 218 52.3
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.3e-50 205.7 222 52.3
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 1.3e-50 205.7 221 54.3
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 3.7e-50 204.1 222 54.1
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 6.4e-50 203.4 221 52.0
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.4e-49 201.4 218 52.3
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.4e-49 200.3 223 51.1
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 1.2e-48 199.1 218 50.9
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 1.2e-48 199.1 224 52.7
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 7.8e-48 196.4 221 50.7
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 1.0e-47 196.1 219 51.6
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 1.7e-47 195.3 208 52.4
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.6e-46 190.3 219 49.3
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 9.5e-46 189.5 218 50.9
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 2.8e-45 188.0 223 48.0
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 6.2e-45 186.8 219 48.9
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 8.1e-45 186.4 192 51.6
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.8e-44 185.3 219 48.4
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.3e-44 184.9 216 49.1
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 2.0e-43 181.8 219 48.9
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 2.6e-43 181.4 225 45.3
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 3.4e-43 181.0 217 46.5
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 9.9e-43 179.5 216 46.3
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 1.3e-42 179.1 217 45.6
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 2.9e-42 177.9 224 49.1
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 4.9e-42 177.2 217 45.6
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 6.4e-42 176.8 218 50.0
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.1e-41 176.0 217 45.6
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.4e-41 175.6 222 47.7
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 1.9e-41 175.3 217 49.8
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 3.2e-41 174.5 220 46.4
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 1.2e-40 172.6 218 49.5
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.7e-40 171.4 218 46.3
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.7e-39 168.7 216 46.8
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 8.6e-39 166.4 218 47.2
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 1.1e-38 166.0 221 46.6
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.5e-38 165.6 216 46.3
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.9e-38 165.2 147 55.8
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 3.3e-38 164.5 219 44.7
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 3.3e-38 164.5 219 44.7
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 4.3e-38 164.1 147 56.5
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 5.6e-38 163.7 143 59.4
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.6e-37 162.2 216 45.4
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.8e-37 161.4 216 45.4
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 4.7e-37 160.6 216 44.9
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.1e-36 159.5 220 44.1
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.1e-36 159.5 220 44.1
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 1.1e-36 159.5 220 44.1
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 3.1e-36 157.9 218 46.3
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 2.0e-35 155.2 208 46.2
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 2.0e-35 155.2 228 43.9
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 9.9e-35 152.9 126 60.3
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 2.2e-34 151.8 220 42.7
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 2.9e-34 151.4 220 44.5
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 4.9e-34 150.6 169 52.1
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-33 149.4 220 45.0
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.4e-33 149.1 223 44.8
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.9e-33 148.7 143 53.8
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.9e-33 148.7 143 53.8
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-33 148.3 220 45.5
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 5.4e-33 147.1 216 44.4
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.1e-33 146.7 220 45.0
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 7.8e-32 143.3 218 40.4
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.0e-31 142.9 143 52.4
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 3.0e-31 141.4 203 45.8
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.9e-31 141.0 89 85.4
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.9e-31 141.0 89 85.4
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 6.6e-31 140.2 203 45.3
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 1.4e-28 132.5 152 48.0
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 5.3e-28 130.6 220 41.8
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 6.9e-28 130.2 172 44.8
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 3.4e-27 127.9 98 64.3
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 5.8e-27 127.1 89 77.5
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 7.6e-27 126.7 224 36.6
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-25 122.9 218 41.3
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 4.2e-25 120.9 99 59.6
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.1e-23 114.0 153 46.4
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.3e-22 110.9 67 70.1
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 9.6e-22 109.8 224 38.4
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-20 105.1 220 38.2
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 3.8e-18 97.8 67 65.7
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 5.4e-17 94.0 216 37.5
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 6.0e-16 90.5 67 61.2
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.9e-15 87.8 66 62.1
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 4.3e-14 84.3 67 59.7
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.8e-13 81.6 96 51.0
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 8.1e-13 80.1 67 56.7
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.1e-12 79.7 94 45.7
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.8e-12 79.0 66 59.1
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 4.0e-12 77.8 58 60.3
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 5.3e-12 77.4 83 49.4
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.0e-10 73.2 85 48.2
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 4.9e-10 70.9 223 34.5
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.5e-10 70.5 219 30.6
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 8.4e-10 70.1 69 50.7
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 3.2e-09 68.2 67 52.2
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 4.2e-09 67.8 71 50.7
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 5.5e-09 67.4 59 54.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.5e-09 67.4 67 47.8
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.7e-08 65.1 193 32.1
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 4.6e-08 64.3 55 47.3
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.6e-08 64.3 193 31.6
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 6.0e-08 63.9 86 38.4
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-07 62.8 87 37.9
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-07 62.8 87 37.9
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 3.9e-07 61.2 194 33.5
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 3.9e-07 61.2 194 33.5
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 8.7e-07 60.1 199 29.6
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-06 59.3 85 37.6
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.5e-06 58.5 87 37.9
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.5e-06 58.5 222 27.5
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 4.3e-06 57.8 190 26.8
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 5.7e-06 57.4 197 31.0
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 9.6e-06 56.6 87 36.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 9.6e-06 56.6 80 33.8
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 9.6e-06 56.6 190 28.4
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 9.6e-06 56.6 217 30.0


User provided reference genes

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