Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 9.8e-127 456.8 234 100.0
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 6.8e-120 434.1 234 92.7
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 6.8e-120 434.1 234 93.6
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 4.4e-119 431.4 234 91.9
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.9e-114 416.0 234 90.6
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.2e-111 406.8 229 91.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.1e-104 383.6 234 82.9
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.8e-104 382.9 234 81.6
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.4e-103 378.6 234 81.2
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 5.8e-103 377.9 233 80.3
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.5e-103 377.5 234 81.2
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 9.8e-103 377.1 234 80.8
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 9.8e-103 377.1 234 80.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.3e-102 376.7 234 80.8
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.3e-102 376.7 234 81.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.7e-102 376.3 234 81.2
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.2e-102 375.9 234 79.9
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.9e-102 375.6 233 79.4
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 3.7e-102 375.2 234 79.1
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.7e-102 375.2 234 79.5
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 4.9e-102 374.8 234 77.8
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 6.4e-102 374.4 234 80.8
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.1e-101 373.6 234 79.1
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.4e-101 373.2 234 80.8
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.9e-101 372.9 234 79.9
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.9e-101 372.9 234 78.6
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.4e-101 371.3 234 78.2
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 7.1e-101 370.9 234 79.9
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.2e-100 370.2 234 80.3
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.2e-100 370.2 234 76.9
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.1e-100 369.4 234 78.2
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 3.5e-100 368.6 234 78.6
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 6.0e-100 367.9 234 77.8
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.3e-99 366.7 234 79.1
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 6.6e-99 364.4 234 79.1
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 8.6e-99 364.0 234 77.4
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 8.6e-99 364.0 254 74.4
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 8.6e-99 364.0 234 78.6
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 8.6e-99 364.0 235 77.4
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.1e-98 363.6 234 76.1
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-98 363.2 234 75.2
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.9e-98 362.8 235 78.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.9e-98 362.8 234 76.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.9e-98 362.8 234 76.5
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 9.5e-98 360.5 234 73.9
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.6e-97 359.8 234 78.2
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.6e-97 359.8 234 75.2
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 2.8e-97 359.0 234 76.5
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 2.8e-97 359.0 234 76.1
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.6e-97 358.6 234 76.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.6e-97 358.6 234 74.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 4.7e-97 358.2 234 75.2
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 6.2e-97 357.8 234 76.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 8.1e-97 357.5 234 76.5
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.4e-96 356.7 234 73.5
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 3.1e-96 355.5 220 80.0
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 3.1e-96 355.5 271 68.6
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.1e-96 355.5 234 75.6
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 4.0e-96 355.1 229 77.7
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.0e-96 355.1 234 76.5
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 5.2e-96 354.8 234 73.5
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 8.9e-96 354.0 234 76.1
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 2.0e-95 352.8 234 73.9
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 2.6e-95 352.4 234 73.9
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 4.4e-95 351.7 234 75.2
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 4.4e-95 351.7 234 73.5
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.7e-94 349.7 234 72.6
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 6.4e-94 347.8 234 73.5
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 6.4e-94 347.8 234 72.2
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.1e-93 347.1 234 72.2
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-93 347.1 236 73.7
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-93 347.1 236 73.7
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.4e-93 346.7 234 71.8
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.9e-93 346.3 234 73.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 4.1e-93 345.1 216 80.6
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.4e-93 344.7 234 73.9
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 9.2e-93 344.0 234 71.8
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.2e-92 343.6 234 73.1
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.6e-92 343.2 234 71.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.6e-92 343.2 250 71.6
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.1e-92 342.8 241 71.8
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 2.7e-92 342.4 236 72.9
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.5e-92 342.0 304 62.8
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.5e-92 342.0 236 75.4
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 6.0e-92 341.3 234 70.9
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.3e-91 340.1 220 78.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.3e-91 340.1 234 72.2
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.3e-91 340.1 216 79.6
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 2.3e-91 339.3 227 77.1
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 3.9e-91 338.6 213 78.9
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.1e-90 337.0 234 70.5
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-90 336.7 234 71.4
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 3.3e-90 335.5 234 72.2
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 4.3e-90 335.1 234 71.8
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 4.3e-90 335.1 213 78.4
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 7.3e-90 334.3 234 70.1
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 7.3e-90 334.3 234 70.9
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.2e-89 333.6 234 70.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.6e-89 333.2 234 70.5
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.1e-89 332.8 213 77.9
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.8e-89 332.4 268 64.2
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 4.7e-89 331.6 234 70.9
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 4.7e-89 331.6 234 70.9
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 4.7e-89 331.6 234 71.4
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 6.2e-89 331.3 234 70.9
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 6.2e-89 331.3 234 69.2
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.1e-88 330.5 213 77.5
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-88 330.1 234 70.5
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.4e-88 330.1 234 70.9
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 5.2e-88 328.2 203 79.8
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-87 327.0 234 69.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-87 327.0 234 69.7
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 3.4e-87 325.5 247 66.4
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 4.4e-87 325.1 248 66.1
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.4e-85 320.1 234 67.5
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.4e-85 319.3 236 69.1
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 7.8e-84 314.3 224 72.8
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.0e-83 313.9 234 70.9
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.3e-83 313.5 234 68.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.6e-83 311.2 252 64.3
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.9e-82 309.7 233 69.1
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.4e-80 303.5 234 65.8
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.8e-80 303.1 234 64.5
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.4e-79 298.9 204 73.5
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 4.5e-79 298.5 234 64.5
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 9.9e-79 297.4 223 69.5
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 8.4e-78 294.3 234 66.7
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.4e-77 293.5 234 66.7
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.4e-77 292.7 184 81.5
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.9e-75 285.4 234 65.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.5e-74 282.7 303 52.8
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.2e-73 278.1 233 60.1
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 6.2e-73 278.1 234 62.4
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 6.2e-73 278.1 234 62.0
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.2e-73 278.1 196 75.0
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.1e-72 277.3 168 79.8
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.4e-72 276.9 226 60.2
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.0e-71 273.1 234 63.7
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.0e-71 273.1 206 67.0
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.4e-71 272.3 234 60.3
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 9.3e-69 264.2 147 94.6
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 3.9e-67 258.8 251 52.2
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 5.1e-67 258.5 233 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.0e-63 246.5 234 55.1
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 2.6e-63 246.1 168 70.2
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.0e-62 244.2 168 72.0
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 2.7e-60 236.1 234 53.8
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 3.7e-57 225.7 138 79.7
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.3e-56 221.9 207 60.4
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 49.1
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.3e-50 202.6 187 58.3
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 5.7e-50 201.8 228 46.5
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-45 187.6 165 61.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 9.4e-45 184.5 122 78.7
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.4e-40 170.6 104 76.0
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.7e-38 163.7 105 80.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.9e-37 160.2 100 84.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 7.2e-37 158.3 147 61.2
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 3.2e-29 132.9 99 73.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-27 127.5 118 56.8
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.4e-27 127.5 118 56.8
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 4.0e-27 125.9 228 36.8
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.9e-22 109.8 104 57.7
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 3.8e-22 109.4 82 67.1
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.1e-20 103.6 160 39.4
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.8e-19 100.5 142 47.2
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.4e-16 90.9 85 60.0
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.7e-14 84.0 68 61.8
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.9e-14 83.2 65 58.5
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 4.2e-13 79.3 99 46.5
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-11 74.7 63 61.9
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 2.2e-09 67.0 191 26.7
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.0e-07 60.5 123 39.0


User provided reference genes

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