Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G588.108 Capsicum annuum HOM05D000040 ORTHO05D010138 1.5e-186 656.0 320 100.0
PGSC0003DMG400037545 Solanum tuberosum HOM05D000040 ORTHO05D010138 1.6e-50 204.1 186 55.9
Solyc01g111850.3 Solanum lycopersicum HOM05D000040 ORTHO05D010138 6.6e-49 198.7 198 53.0
Peaxi162Scf00362g00045 Petunia axillaris HOM05D000040 ORTHO05D010138 6.6e-41 172.2 196 45.4
CAN.G588.106 Capsicum annuum HOM05D000040 ORTHO05D010138 8.6e-41 171.8 100 77.0
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 9.5e-40 168.3 112 81.2
Nitab4.5_0004557g0040 Nicotiana tabacum HOM05D000040 ORTHO05D010138 3.1e-38 163.3 197 45.7
Nitab4.5_0004867g0080 Nicotiana tabacum HOM05D000040 ORTHO05D010138 6.0e-34 149.1 165 49.1
CAN.G792.22 Capsicum annuum HOM05D000065 ORTHO05D010113 1.3e-33 147.9 113 73.5
CAN.G672.2 Capsicum annuum HOM05D000068 ORTHO05D000084 1.7e-25 120.9 86 74.4
Nitab4.5_0002004g0050 Nicotiana tabacum HOM05D000040 ORTHO05D010138 1.4e-22 111.3 194 36.6
Sopen07g002520 Solanum pennellii HOM05D000040 ORTHO05D010138 4.0e-22 109.8 184 37.5
Nitab4.5_0007049g0040 Nicotiana tabacum HOM05D000040 ORTHO05D010138 8.9e-22 108.6 189 35.4
Nitab4.5_0002004g0100 Nicotiana tabacum HOM05D000040 ORTHO05D010138 1.2e-21 108.2 174 39.7
Nitab4.5_0015062g0010 Nicotiana tabacum HOM05D000040 ORTHO05D010138 1.2e-21 108.2 183 37.2
Nitab4.5_0008765g0010 Nicotiana tabacum HOM05D000040 ORTHO05D010138 1.5e-21 107.8 123 45.5
Solyc07g006450.1 Solanum lycopersicum HOM05D000040 ORTHO05D010138 5.8e-21 105.9 132 42.4
Sopen07g002530 Solanum pennellii HOM05D000040 ORTHO05D010138 1.3e-20 104.8 132 41.7
Solyc07g006430.1 Solanum lycopersicum HOM05D000040 ORTHO05D010138 2.2e-20 104.0 205 34.1
Nitab4.5_0002004g0070 Nicotiana tabacum HOM05D000040 ORTHO05D010138 2.9e-20 103.6 167 37.7
Nitab4.5_0008765g0020 Nicotiana tabacum HOM05D000040 ORTHO05D010138 2.9e-20 103.6 179 34.6
Nitab4.5_0007049g0010 Nicotiana tabacum HOM05D000040 ORTHO05D010138 3.8e-20 103.2 198 33.8
PGSC0003DMG400043757 Solanum tuberosum HOM05D000040 ORTHO05D010138 3.8e-20 103.2 229 32.8
CAN.G1618.4 Capsicum annuum HOM05D000040 ORTHO05D010138 6.4e-20 102.4 153 39.2
PGSC0003DMG400037304 Solanum tuberosum HOM05D000040 ORTHO05D010138 1.1e-19 101.7 224 33.0
Nitab4.5_0002004g0090 Nicotiana tabacum HOM05D000040 ORTHO05D010138 2.4e-19 100.5 179 35.2
Nitab4.5_0007049g0020 Nicotiana tabacum HOM05D000040 ORTHO05D010138 3.2e-19 100.1 143 39.2
Solyc07g006440.1 Solanum lycopersicum HOM05D000040 ORTHO05D010138 5.4e-19 99.4 132 40.9
Peaxi162Scf00457g00032 Petunia axillaris HOM05D000040 ORTHO05D010138 7.1e-19 99.0 152 36.2
PGSC0003DMG400027447 Solanum tuberosum HOM05D000040 ORTHO05D010138 9.2e-19 98.6 143 36.4
Nitab4.5_0004847g0020 Nicotiana tabacum HOM05D000040 ORTHO05D010138 1.2e-18 98.2 132 40.9
PGSC0003DMG400035871 Solanum tuberosum HOM05D000040 ORTHO05D010138 1.6e-18 97.8 132 39.4
Nitab4.5_0002004g0060 Nicotiana tabacum HOM05D000040 ORTHO05D010138 4.6e-18 96.3 194 34.0
CAN.G584.54 Capsicum annuum HOM05D000040 ORTHO05D010138 1.0e-17 95.1 127 39.4
CAN.G1618.16 Capsicum annuum HOM05D000040 ORTHO05D010138 1.3e-17 94.7 195 33.8
CAN.G231.26 Capsicum annuum HOM05D000040 ORTHO05D010138 5.1e-17 92.8 127 37.8
CAN.G760.11 Capsicum annuum HOM05D000040 ORTHO05D114954 8.7e-17 92.0 61 82.0
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 1.1e-16 91.7 76 67.1
CAN.G1618.15 Capsicum annuum HOM05D000040 ORTHO05D010138 1.5e-16 91.3 195 32.3
PGSC0003DMG400036253 Solanum tuberosum HOM05D000040 ORTHO05D010138 3.3e-16 90.1 140 38.6
CAN.G584.47 Capsicum annuum HOM05D000040 ORTHO05D010138 4.3e-16 89.7 140 38.6
CAN.G9223.1 Capsicum annuum HOM05D000040 ORTHO05D010138 7.3e-16 89.0 128 38.3
CAN.G1618.2 Capsicum annuum HOM05D000040 ORTHO05D010138 1.6e-15 87.8 177 33.9
CAN.G1926.13 Capsicum annuum HOM05D000040 ORTHO05D010138 3.6e-15 86.7 175 33.7
CAN.G186.21 Capsicum annuum HOM05D000040 ORTHO05D010138 6.2e-15 85.9 123 38.2
CAN.G1618.8 Capsicum annuum HOM05D000040 ORTHO05D010138 1.1e-14 85.1 125 38.4
CAN.G584.53 Capsicum annuum HOM05D000040 ORTHO05D010138 1.1e-14 85.1 125 38.4
CAN.G584.61 Capsicum annuum HOM05D000040 ORTHO05D010138 1.8e-14 84.3 126 38.1
CAN.G1618.5 Capsicum annuum HOM05D000040 ORTHO05D010138 2.4e-14 84.0 123 39.0
CAN.G584.56 Capsicum annuum HOM05D000040 ORTHO05D010138 2.4e-14 84.0 123 38.2
CAN.G231.27 Capsicum annuum HOM05D000040 ORTHO05D010138 6.9e-14 82.4 125 38.4
CAN.G1026.6 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-13 81.3 46 87.0
CAN.G584.51 Capsicum annuum HOM05D000040 ORTHO05D010138 2.2e-12 77.4 174 31.6
CAN.G584.58 Capsicum annuum HOM05D000040 ORTHO05D010138 2.9e-12 77.0 83 45.8
PGSC0003DMG400037671 Solanum tuberosum HOM05D000040 ORTHO05D010138 2.9e-12 77.0 128 39.1
DCAR_002612 Daucus carota HOM05D000040 ORTHO05D000759 8.4e-12 75.5 108 42.6
Nitab4.5_0004847g0030 Nicotiana tabacum HOM05D000040 ORTHO05D010138 8.4e-12 75.5 94 40.4
CAN.G584.41 Capsicum annuum HOM05D000040 ORTHO05D010138 1.1e-11 75.1 123 38.2
Medtr1g039270 Medicago truncatula HOM05D000040 ORTHO05D000759 1.4e-11 74.7 110 39.1
Nitab4.5_0002605g0040 Nicotiana tabacum HOM05D000040 ORTHO05D000759 5.4e-11 72.8 110 39.1
MSTRG.11322 Avicennia marina HOM05D000040 ORTHO05D000759 9.3e-11 72.0 127 37.0
ClCG01G008010 Citrullus lanatus HOM05D000040 ORTHO05D000759 1.2e-10 71.6 113 38.9
Cc04_g07350 Coffea canephora HOM05D000040 ORTHO05D000759 1.2e-10 71.6 129 33.3
MSTRG.17952 Avicennia marina HOM05D000040 ORTHO05D000759 1.6e-10 71.2 108 38.0
Lsat_1_v5_gn_9_43240 Lactuca sativa HOM05D000040 ORTHO05D000759 1.6e-10 71.2 117 36.8
Sed0007697 Sechium edule HOM05D000040 ORTHO05D000759 1.6e-10 71.2 113 38.9
Ca_12368_v3 Cicer arietinum L. HOM05D000040 ORTHO05D000759 2.7e-10 70.5 110 35.5
ECA232G2381 Erigeron canadensis HOM05D000040 ORTHO05D000759 2.7e-10 70.5 117 37.6
Psat6g100520 Pisum sativum HOM05D000040 ORTHO05D000759 2.7e-10 70.5 110 38.2
MELO3C005079.2 Cucumis melo HOM05D000040 ORTHO05D000759 3.5e-10 70.1 108 39.8
CsaV3_5G021850 Cucumis sativus L. HOM05D000040 ORTHO05D000759 3.5e-10 70.1 108 39.8
PGSC0003DMG400025293 Solanum tuberosum HOM05D000040 ORTHO05D000759 3.5e-10 70.1 110 37.3
Sopen04g004030 Solanum pennellii HOM05D000040 ORTHO05D000759 4.6e-10 69.7 110 36.4
TPR.G34246 Trifolium pratense HOM05D000040 ORTHO05D000759 4.6e-10 69.7 110 38.2
CAN.G1500.1 Capsicum annuum HOM05D000037 ORTHO05D000150 6.0e-10 69.3 40 87.5
Peaxi162Scf00329g00002 Petunia axillaris HOM05D000040 ORTHO05D000759 6.0e-10 69.3 110 37.3
Solyc04g008850.1 Solanum lycopersicum HOM05D000040 ORTHO05D000759 6.0e-10 69.3 110 36.4
Atru.chr4.3137 Acer truncatum HOM05D000040 ORTHO05D010138 7.8e-10 68.9 118 32.2
HanXRQChr11g0320371 Helianthus annuus HOM05D000040 ORTHO05D000759 7.8e-10 68.9 117 35.0
CAN.G553.21 Capsicum annuum HOM05D000060 ORTHO05D000082 1.0e-09 68.6 45 82.2
Nitab4.5_0006739g0020 Nicotiana tabacum HOM05D000040 ORTHO05D000759 1.0e-09 68.6 110 37.3
RhsimUnG0102600 Rhododendron simsii HOM05D000040 ORTHO05D000759 1.0e-09 68.6 108 39.8
Sc10g0006640 Simmondsia chinensis HOM05D000040 ORTHO05D000759 1.0e-09 68.6 107 39.3
PGR044G0727 Punica granatum HOM05D000040 ORTHO05D000759 1.3e-09 68.2 108 40.7
PGSC0003DMG400002196 Solanum tuberosum HOM05D000040 ORTHO05D000759 1.3e-09 68.2 108 35.2
Cc04_g07330 Coffea canephora HOM05D000040 ORTHO05D000759 1.7e-09 67.8 129 29.5
Solyc02g005601.1 Solanum lycopersicum HOM05D000040 ORTHO05D000759 1.7e-09 67.8 108 37.0
Sopen02g002250 Solanum pennellii HOM05D000040 ORTHO05D000759 1.7e-09 67.8 108 37.0
SalBow2G2127 Salvia bowleyana HOM05D000040 ORTHO05D000759 2.3e-09 67.4 108 35.2
Aqoxy5G00769 Aquilegia oxysepala HOM05D000040 ORTHO05D000759 3.9e-09 66.6 116 37.9
vmacro16005 Vaccinium macrocarpon HOM05D000040 ORTHO05D000759 3.9e-09 66.6 108 38.0
Lj3C845T21 Lonicera japonica HOM05D000040 ORTHO05D000759 5.1e-09 66.2 108 38.0
SGA_v2.0_scaffold25G10985 Striga asiatica HOM05D000040 ORTHO05D000759 5.1e-09 66.2 133 34.6
Migut.N00685 Erythranthe guttata HOM05D000040 ORTHO05D000759 1.5e-08 64.7 108 37.0
CAN.G1598.7 Capsicum annuum HOM05D000045 ORTHO05D000067 1.9e-08 64.3 77 54.5
Lj6C706G12 Lonicera japonica HOM05D000040 ORTHO05D000759 2.5e-08 63.9 101 35.6
CAN.G419.6 Capsicum annuum HOM05D000040 ORTHO05D000759 3.3e-08 63.5 110 36.4
Dinv17733 Davidia involucrata HOM05D000040 ORTHO05D000759 3.3e-08 63.5 108 36.1
Dinv18828 Davidia involucrata HOM05D000040 ORTHO05D000759 3.3e-08 63.5 108 36.1
FvH4_4g37260 Fragaria vesca HOM05D000040 ORTHO05D000759 3.3e-08 63.5 108 38.0
FAN07G1108 Fragaria x ananassa HOM05D000040 ORTHO05D000759 3.3e-08 63.5 108 38.0
CsaV3_5G029100 Cucumis sativus L. HOM05D000040 ORTHO05D000759 4.3e-08 63.2 106 36.8
Migut.I00384 Erythranthe guttata HOM05D000040 ORTHO05D000759 4.3e-08 63.2 129 31.8
Migut.L00257 Erythranthe guttata HOM05D000040 ORTHO05D000267 5.6e-08 62.8 151 31.1
RcHm_v2.0_Chr4g0447081 Rosa chinensis HOM05D000040 ORTHO05D000759 5.6e-08 62.8 108 38.0
SHI20632 Sapria himalayana HOM05D000040 ORTHO05D009963 5.6e-08 62.8 159 27.7
PGSC0003DMG400040884 Solanum tuberosum HOM05D000040 ORTHO05D010138 5.6e-08 62.8 66 45.5
FAN17G2399 Fragaria x ananassa HOM05D000040 ORTHO05D000759 7.3e-08 62.4 110 37.3
MD00G1127200 Malus domestica HOM05D000040 ORTHO05D000759 7.3e-08 62.4 108 36.1
Oeu042045.1 Olea europaea HOM05D000040 ORTHO05D000759 7.3e-08 62.4 127 32.3
Phvul.003G000900 Phaseolus vulgaris HOM05D000040 ORTHO05D000759 7.3e-08 62.4 107 34.6
SGA_v2.0_scaffold95G28688 Striga asiatica HOM05D000040 ORTHO05D402090 7.3e-08 62.4 103 36.9
Cc04_g07380 Coffea canephora HOM05D000040 ORTHO05D000759 9.6e-08 62.0 131 32.8
Cc11_g01090 Coffea canephora HOM05D000040 ORTHO05D000759 9.6e-08 62.0 108 35.2
PSO384G0741 Papaver somniferum HOM05D000040 ORTHO05D000759 9.6e-08 62.0 114 32.5
Rhsim02G0215100 Rhododendron simsii HOM05D000040 ORTHO05D000267 9.6e-08 62.0 122 31.1
CAN.G584.48 Capsicum annuum HOM05D000040 ORTHO05D010138 1.3e-07 61.6 85 40.0
ClCG02G014230 Citrullus lanatus HOM05D000040 ORTHO05D000759 1.3e-07 61.6 106 35.8
Aa31LG8G5330 Aethionema arabicum HOM05D000040 ORTHO05D013140 1.6e-07 61.2 125 28.8
Lj3g0008139 Lotus japonicus HOM05D000040 ORTHO05D000759 1.6e-07 61.2 113 31.9
Medtr1g115210 Medicago truncatula HOM05D000040 ORTHO05D000759 1.6e-07 61.2 101 35.6
PSO339G5798 Papaver somniferum HOM05D000040 ORTHO05D000759 1.6e-07 61.2 114 32.5
CSS0032505 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000759 2.1e-07 60.8 133 33.1
Haze_25386 Corylus avellana HOM05D000040 ORTHO05D000267 2.8e-07 60.5 162 29.6
Nitab4.5_0000139g0010 Nicotiana tabacum HOM05D000040 ORTHO05D000759 2.8e-07 60.5 108 36.1
Peaxi162Scf00900g00110 Petunia axillaris HOM05D000040 ORTHO05D000759 2.8e-07 60.5 108 36.1
SHI13108 Sapria himalayana HOM05D000040 ORTHO05D000759 3.6e-07 60.1 111 29.7
TAR376G0350 Trochodendron aralioides HOM05D000040 ORTHO05D004411 3.6e-07 60.1 100 36.0
Cc04_g07370 Coffea canephora HOM05D000040 ORTHO05D000759 4.8e-07 59.7 133 30.8
MELO3C011761.2 Cucumis melo HOM05D000040 ORTHO05D000759 4.8e-07 59.7 106 35.8
MD13G1002100 Malus domestica HOM05D000040 ORTHO05D000759 4.8e-07 59.7 108 35.2
BcaB03g13572 Brassica carinata HOM05D000040 ORTHO05D000759 6.2e-07 59.3 156 26.9
C05p00650 Brassica napus HOM05D000040 ORTHO05D000759 6.2e-07 59.3 156 26.9
CAN.G1156.41 Capsicum annuum HOM05D000040 ORTHO05D000267 6.2e-07 59.3 127 26.0
Cc04_g07360 Coffea canephora HOM05D000040 ORTHO05D000759 6.2e-07 59.3 131 32.1
MD14G1220700 Malus domestica HOM05D000040 ORTHO05D010138 8.1e-07 58.9 147 29.9
Nitab4.5_0006537g0020 Nicotiana tabacum HOM05D000040 ORTHO05D000759 8.1e-07 58.9 108 36.1
Glyma.09G285600 Glycine max HOM05D000040 ORTHO05D000759 1.1e-06 58.5 107 34.6
CDE08G1626 Ceratophyllum demersum HOM05D000040 ORTHO05D000759 1.8e-06 57.8 129 30.2
TAR376G0187 Trochodendron aralioides HOM05D000040 ORTHO05D004411 2.4e-06 57.4 104 33.7
Prupe.5G216000 Prunus persica HOM05D000040 ORTHO05D010138 3.1e-06 57.0 145 28.3
TWI34G1678 Tripterygium wilfordii HOM05D000040 ORTHO05D000267 5.3e-06 56.2 180 24.4


User provided reference genes

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