Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 6.8e-57 223.8 114 100.0
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.0e-49 199.9 115 89.6
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 2.6e-48 195.3 114 86.0
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 7.0e-46 187.2 116 79.3
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 7.8e-45 183.7 115 79.1
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 2.3e-44 182.2 115 85.2
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 2.5e-43 178.7 115 79.1
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.5e-43 178.7 115 74.8
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 1.6e-42 176.0 121 72.7
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 3.6e-42 174.9 115 75.7
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 3.6e-42 174.9 117 73.5
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.1e-41 173.3 116 70.7
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 1.4e-41 172.9 121 71.1
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.0e-41 171.4 116 70.7
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 8.9e-41 170.2 116 73.3
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 8.9e-41 170.2 115 73.9
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 1.2e-40 169.9 115 73.0
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 2.6e-40 168.7 115 73.0
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 4.4e-40 167.9 115 70.4
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 1.7e-39 166.0 121 71.9
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 2.2e-39 165.6 115 72.2
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.2e-39 165.6 116 72.4
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 2.9e-39 165.2 115 70.4
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 2.9e-39 165.2 118 72.0
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 3.7e-39 164.9 116 73.3
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 3.7e-39 164.9 116 69.8
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 6.4e-39 164.1 116 72.4
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 8.3e-39 163.7 115 71.3
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.1e-38 163.3 116 70.7
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 1.1e-38 163.3 115 70.4
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 1.4e-38 162.9 114 70.2
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 1.4e-38 162.9 118 70.3
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 1.9e-38 162.5 115 71.3
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 1.9e-38 162.5 116 69.8
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 1.9e-38 162.5 114 71.1
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 3.2e-38 161.8 115 69.6
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 3.2e-38 161.8 125 70.4
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 4.1e-38 161.4 115 71.3
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 5.4e-38 161.0 115 67.8
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 5.4e-38 161.0 115 69.6
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 7.1e-38 160.6 115 69.6
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 7.1e-38 160.6 118 68.6
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 9.2e-38 160.2 115 70.4
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 1.2e-37 159.8 115 66.1
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 1.6e-37 159.5 117 70.9
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 2.1e-37 159.1 121 65.3
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 2.1e-37 159.1 115 68.7
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.1e-37 159.1 115 68.7
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 2.1e-37 159.1 115 67.8
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 2.7e-37 158.7 123 65.9
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 2.7e-37 158.7 123 65.9
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 2.7e-37 158.7 115 67.0
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 4.6e-37 157.9 115 66.1
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 4.6e-37 157.9 119 64.7
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.6e-37 157.9 115 67.8
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 4.6e-37 157.9 121 65.3
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 4.6e-37 157.9 115 67.0
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 6.0e-37 157.5 114 70.2
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 6.0e-37 157.5 115 67.0
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 7.8e-37 157.1 115 67.8
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 7.8e-37 157.1 113 69.0
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 1.3e-36 156.4 115 69.6
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 1.3e-36 156.4 114 68.4
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 1.3e-36 156.4 115 64.3
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 1.3e-36 156.4 113 67.3
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 1.3e-36 156.4 115 66.1
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 1.7e-36 156.0 115 67.0
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 1.7e-36 156.0 115 67.8
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 2.3e-36 155.6 116 65.5
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 3.0e-36 155.2 120 64.2
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 3.9e-36 154.8 116 64.7
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 3.9e-36 154.8 117 68.4
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 5.1e-36 154.5 132 62.9
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 6.6e-36 154.1 120 63.3
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 6.6e-36 154.1 119 64.7
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 8.6e-36 153.7 116 69.8
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 1.1e-35 153.3 120 63.3
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 1.1e-35 153.3 120 64.2
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 1.5e-35 152.9 117 65.0
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.9e-35 152.5 110 67.3
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 1.9e-35 152.5 133 63.2
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 2.5e-35 152.1 121 62.0
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 3.3e-35 151.8 114 64.9
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 5.6e-35 151.0 113 67.3
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 1.6e-34 149.4 118 64.4
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 2.8e-34 148.7 149 56.4
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 6.2e-34 147.5 115 64.3
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 4.0e-33 144.8 111 66.7
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 8.9e-33 143.7 126 57.1
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 5.8e-32 141.0 118 62.7
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 7.6e-32 140.6 116 62.1
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 9.9e-32 140.2 118 62.7
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 2.9e-31 138.7 114 62.3
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 2.9e-31 138.7 127 61.4
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 2.9e-31 138.7 110 65.5
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 3.8e-31 138.3 116 58.6
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 4.9e-31 137.9 115 60.9
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 6.4e-31 137.5 126 54.8
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 1.9e-30 136.0 117 56.4
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 3.2e-30 135.2 115 60.0
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 4.1e-30 134.8 115 60.9
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 5.4e-30 134.4 115 58.3
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 5.4e-30 134.4 115 58.3
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 5.4e-30 134.4 115 58.3
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 5.4e-30 134.4 115 58.3
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 5.4e-30 134.4 115 59.1
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 9.2e-30 133.7 115 57.4
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 1.2e-29 133.3 115 57.4
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 1.6e-29 132.9 115 60.0
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 3.5e-29 131.7 115 58.3
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 3.5e-29 131.7 115 58.3
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 3.5e-29 131.7 115 58.3
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 3.5e-29 131.7 115 58.3
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 6.0e-29 131.0 119 57.1
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 1.0e-28 130.2 117 58.1
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 8.6e-28 127.1 115 55.7
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 1.1e-27 126.7 113 54.0
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 3.3e-27 125.2 102 59.8
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 1.8e-25 119.4 131 48.9
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 1.8e-25 119.4 147 45.6
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 8.9e-25 117.1 115 53.9
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 3.4e-24 115.2 112 52.7
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 2.7e-21 105.5 126 46.8
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 3.5e-21 105.1 73 72.6
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.8e-15 85.1 57 80.7
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 4.9e-15 84.7 133 38.3
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 3.3e-11 72.0 73 50.7
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 2.8e-10 68.9 43 69.8
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 9.0e-09 63.9 43 67.4
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 4.5e-08 61.6 49 57.1
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 7.6e-08 60.8 37 73.0
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 9.9e-08 60.5 36 75.0
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 3.2e-06 55.5 114 30.7
Medtr5g047050 Medicago truncatula HOM05D001012 ORTHO05D002597 3.2e-06 55.5 117 31.6
Psat2g093600 Pisum sativum HOM05D001012 ORTHO05D002597 4.2e-06 55.1 115 31.3
TPR.G38561 Trifolium pratense HOM05D001012 ORTHO05D002597 4.2e-06 55.1 116 31.9
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 7.1e-06 54.3 119 29.4
arahy.Tifrunner.gnm1.ann1.QD4C18 Arachis hypogaea HOM05D001012 ORTHO05D002597 9.3e-06 53.9 117 33.3
arahy.Tifrunner.gnm1.ann1.WE17ZA Arachis hypogaea HOM05D001012 ORTHO05D002597 9.3e-06 53.9 117 33.3
Lj2g0027117 Lotus japonicus HOM05D001012 ORTHO05D002597 9.3e-06 53.9 115 31.3


User provided reference genes

Program Settings