Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 4.3e-50 201.1 103 100.0
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 8.0e-49 196.8 103 98.1
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 3.1e-48 194.9 103 97.1
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.5e-47 192.6 103 95.1
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 95.1
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 3.4e-47 191.4 102 94.1
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.3e-46 189.5 103 93.2
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.3e-46 189.5 103 93.2
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.7e-46 188.0 103 92.2
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 5.4e-45 184.1 98 94.9
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.9e-43 177.9 103 87.4
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 5.0e-43 177.6 103 87.4
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 3.3e-42 174.9 102 85.3
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 5.6e-42 174.1 103 86.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 9.5e-42 173.3 102 83.3
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.2e-41 172.9 102 83.3
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.1e-40 169.9 100 86.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 1.8e-40 169.1 98 87.8
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 3.1e-40 168.3 103 81.6
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 4.0e-40 167.9 102 80.4
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 4.0e-40 167.9 103 80.6
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 4.0e-40 167.9 103 82.5
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.8e-40 167.2 102 81.4
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 6.8e-40 167.2 103 80.6
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 80.6
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 82.5
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 81.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.0e-39 165.6 102 81.4
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 81.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 2.0e-39 165.6 101 79.2
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 2.6e-39 165.2 103 81.6
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.6e-39 165.2 102 80.4
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 5.8e-39 164.1 103 78.6
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 7.5e-39 163.7 102 80.4
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 7.5e-39 163.7 98 83.7
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 76.7
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 9.8e-39 163.3 98 83.7
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 9.8e-39 163.3 101 79.2
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.2e-38 162.2 97 82.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.9e-38 161.8 103 77.7
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.7e-38 161.4 100 80.0
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 78.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 6.4e-38 160.6 98 81.6
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 78.6
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 77.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.1e-37 159.8 102 78.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 77.7
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 78.6
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.4e-37 159.5 100 78.0
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 2.4e-37 158.7 100 81.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 2.4e-37 158.7 100 81.0
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 2.4e-37 158.7 98 81.6
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.1e-37 157.9 98 79.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 75.7
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 5.4e-37 157.5 100 77.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 76.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 7.0e-37 157.1 100 78.0
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 74.8
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 74.8
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 74.8
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 74.8
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.6e-36 156.0 102 75.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.1e-36 155.6 98 79.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.7e-36 155.2 98 79.6
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 2.7e-36 155.2 97 77.3
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 3.5e-36 154.8 103 73.8
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 73.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 6.0e-36 154.1 100 79.0
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 7.8e-36 153.7 95 80.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 7.8e-36 153.7 99 77.8
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 73.5
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.3e-35 152.9 99 74.7
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 74.7
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 72.8
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.7e-35 152.5 96 77.1
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.7e-35 152.5 94 79.8
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.7e-35 152.5 99 76.8
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 75.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 71.8
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 3.0e-35 151.8 98 76.5
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 3.9e-35 151.4 102 72.5
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 5.1e-35 151.0 96 76.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.1e-35 151.0 96 76.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.1e-35 151.0 96 76.0
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 5.1e-35 151.0 98 76.5
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 5.1e-35 151.0 101 72.3
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 6.6e-35 150.6 103 72.8
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 6.6e-35 150.6 103 72.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 8.6e-35 150.2 103 71.8
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.6e-35 150.2 100 76.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 8.6e-35 150.2 98 73.5
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.1e-34 149.8 100 74.0
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 94 78.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.5e-34 149.4 100 73.0
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.5e-34 149.4 98 75.5
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 2.5e-34 148.7 100 74.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 95 75.8
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 3.3e-34 148.3 98 74.5
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 3.3e-34 148.3 103 71.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 5.6e-34 147.5 99 73.7
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 7.3e-34 147.1 99 74.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 7.3e-34 147.1 99 74.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 7.3e-34 147.1 100 74.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 70.9
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 70.9
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 9.5e-34 146.7 98 74.5
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.2e-33 146.4 98 73.5
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 2.1e-33 145.6 103 71.8
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 70.9
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.9
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 4.0e-32 141.4 100 70.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 5.2e-32 141.0 100 69.0
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.8e-32 140.6 95 76.8
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-31 139.0 95 75.8
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.4e-31 138.3 95 75.8
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.9e-30 135.2 95 73.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.9e-30 135.2 95 73.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 6.6e-27 124.0 104 66.3
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 6.6e-27 124.0 104 66.3
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.5e-26 122.9 74 75.7
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.1e-25 119.0 77 70.1
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.1e-24 116.7 156 46.2
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 2.6e-23 112.1 68 76.5
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 3.4e-23 111.7 68 75.0
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 4.9e-22 107.8 73 69.9
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.9e-22 107.8 85 65.9
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 8.4e-22 107.1 70 72.9
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 4.2e-21 104.8 70 70.0
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 5.4e-21 104.4 70 68.6
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 7.1e-21 104.0 65 72.3
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 6.6e-19 97.4 88 58.0
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 3.3e-18 95.1 83 56.6
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 5.6e-18 94.4 89 57.3
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-17 90.9 103 52.4
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 3.1e-16 88.6 62 69.4
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.8e-15 84.3 99 52.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 9.3e-13 77.0 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.0e-12 74.3 54 64.8
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 7.8e-12 73.9 62 54.8
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 2.8e-09 65.5 85 49.4
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.8e-09 64.7 75 49.3
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 9.0e-08 60.5 101 37.6
PRCOL_00000303 Prasinoderma coloniale HOM05D005227 ORTHO05D333637 8.4e-06 53.9 92 34.8


User provided reference genes

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