Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.0e-200 702.2 349 100.0
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 4.3e-179 631.3 349 88.3
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 2.6e-176 622.1 342 88.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.6e-168 594.0 342 84.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 5.5e-166 587.8 324 88.3
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.1e-157 559.3 317 85.8
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.4e-148 530.0 349 72.2
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.0e-141 504.2 335 75.2
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.2e-138 494.2 349 67.3
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 3.5e-136 488.8 340 67.6
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 3.8e-135 485.3 349 65.6
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.0e-132 477.2 335 67.2
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 5.2e-132 474.9 349 64.8
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.1e-129 467.2 349 63.9
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.1e-129 467.2 349 63.0
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.8e-129 466.5 349 62.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 2.0e-128 463.0 348 62.6
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 2.2e-127 459.5 349 62.8
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 2.9e-127 459.1 349 63.9
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.5e-126 456.1 349 61.6
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 8.0e-125 451.1 348 62.4
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.8e-124 449.9 349 60.5
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 3.0e-124 449.1 356 60.1
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 5.2e-124 448.4 349 61.3
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 5.2e-124 448.4 346 60.1
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.0e-123 446.4 349 61.6
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.0e-123 446.4 348 61.5
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.6e-123 446.0 349 63.6
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 4.4e-123 445.3 347 61.4
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 9.8e-123 444.1 349 61.0
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.7e-122 443.4 347 61.1
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.7e-122 442.2 349 59.6
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 6.3e-122 441.4 352 61.6
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 6.3e-122 441.4 351 61.0
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 7.0e-121 438.0 349 63.0
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-120 436.8 351 60.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 2.0e-120 436.4 352 61.6
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.5e-120 435.3 301 68.4
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.5e-120 435.3 347 59.4
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 7.8e-120 434.5 349 61.9
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 1.3e-119 433.7 349 59.0
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.7e-119 433.3 349 59.0
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.7e-119 433.3 348 60.3
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 2.3e-119 433.0 348 59.2
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.3e-119 433.0 353 59.8
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 3.8e-119 432.2 353 58.6
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.5e-118 430.3 349 59.6
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.5e-118 429.5 350 59.7
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.5e-118 429.5 313 65.5
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 5.6e-118 428.3 353 59.5
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.6e-118 428.3 350 59.4
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 5.6e-118 428.3 350 59.4
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.6e-117 426.8 349 59.0
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 6.1e-117 424.9 348 59.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 3.4e-115 419.1 332 58.7
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 5.7e-115 418.3 349 58.5
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 5.7e-115 418.3 349 58.2
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 9.8e-115 417.5 342 59.1
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 4.9e-114 415.2 289 65.7
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 8.3e-114 414.5 345 56.8
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.4e-113 413.7 341 59.8
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.8e-113 413.3 349 56.2
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.8e-113 413.3 348 57.5
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.2e-113 412.5 280 67.5
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 5.4e-113 411.8 364 56.6
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 9.2e-113 411.0 297 64.0
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 3.5e-112 409.1 349 57.6
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.0e-111 407.5 330 57.0
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 2.3e-111 406.4 309 60.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.6e-111 404.4 342 56.7
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.1e-110 404.1 291 63.9
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-110 403.7 329 58.7
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.9e-110 403.3 350 55.4
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 2.5e-110 402.9 349 58.2
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 3.3e-110 402.5 309 59.9
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 3.3e-110 402.5 299 66.2
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 3.3e-110 402.5 350 54.6
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 7.3e-110 401.4 298 62.1
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 4.9e-106 388.7 352 51.7
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 5.4e-105 385.2 355 54.6
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.2e-104 384.0 349 53.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 2.7e-104 382.9 296 60.8
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 4.3e-102 375.6 349 53.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 7.3e-102 374.8 349 52.1
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 2.1e-101 373.2 351 52.7
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 2.1e-101 373.2 349 51.9
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.7e-101 372.1 289 60.2
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 6.2e-101 371.7 324 55.2
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.4e-100 370.5 349 53.0
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 2.3e-100 369.8 349 53.0
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 4.0e-100 369.0 329 55.6
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.2e-99 367.5 350 52.6
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.2e-99 367.5 350 52.6
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.4e-99 365.5 349 51.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.3e-98 364.0 350 51.1
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 3.7e-98 362.5 324 55.2
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.4e-97 359.8 350 50.6
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.7e-95 353.6 351 50.1
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.3e-95 353.2 220 75.0
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 7.3e-94 348.2 349 49.3
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.1e-93 346.7 285 55.8
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 6.2e-93 345.1 339 52.8
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 7.6e-91 338.2 250 63.2
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.9e-89 333.6 325 50.2
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.4e-76 290.8 334 43.7
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.4e-76 290.0 296 49.0
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.5e-75 287.3 285 48.1
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.4e-75 286.2 271 54.2
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.7e-74 283.9 289 46.0
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 6.4e-74 282.0 303 45.5
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.2e-67 261.2 294 41.5
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.3e-66 257.7 342 38.9
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 5.6e-62 242.3 307 43.3
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 8.2e-61 238.4 190 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-50 204.5 287 37.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-50 204.1 310 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-50 202.6 293 36.2
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-48 196.4 288 35.8
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.3e-47 193.7 154 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.0 316 35.1
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 8.2e-45 185.3 282 34.4
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 9.1e-44 181.8 285 35.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-43 179.9 316 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-42 177.9 258 38.4
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 173.7 306 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.5e-41 172.6 299 35.1
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-40 171.4 301 34.9
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-40 170.6 307 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-40 170.2 294 35.0
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.1e-40 169.1 295 34.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-38 164.9 236 38.6
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-38 163.3 346 28.3
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.4e-38 162.9 290 33.4
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.8e-37 159.5 290 32.8
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-33 146.4 290 31.4
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.7e-29 133.3 316 30.1
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.5e-27 126.7 298 29.2
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.5e-25 120.6 277 30.3
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-15 85.5 63 58.7
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 4.8e-13 79.7 47 66.0
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.1e-12 78.6 153 32.0
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.3e-10 71.6 94 40.4
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.7e-10 71.2 74 41.9


User provided reference genes

Program Settings