Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 0.0e+00 1132.1 596 100.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 7.4e-288 993.4 619 84.5
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.1e-283 979.5 610 84.6
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.1e-278 961.1 602 84.2
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-276 956.4 702 74.2
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 6.5e-276 953.7 702 74.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.7e-252 875.9 607 77.3
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.1e-211 740.3 619 64.0
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.1e-202 709.5 621 63.1
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.6e-194 683.3 611 59.6
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 6.2e-194 681.4 610 63.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.8e-191 672.2 647 57.8
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.4e-190 669.5 619 59.8
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.8e-186 656.0 631 58.5
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.0e-185 652.1 606 57.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 5.3e-185 651.7 606 57.6
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 6.9e-185 651.4 615 56.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.6e-184 649.4 606 56.9
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.6e-184 649.4 610 58.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.2e-183 646.4 610 57.7
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-182 643.7 614 58.0
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.9e-182 643.3 632 59.5
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 6.7e-180 634.8 614 57.7
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 3.3e-179 632.5 622 57.2
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.1e-174 617.5 618 57.0
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.5e-174 616.3 618 56.6
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-174 615.9 615 55.9
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 5.5e-174 615.1 604 56.0
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.1e-174 614.8 621 57.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.2e-173 614.0 621 55.9
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.6e-173 613.6 564 62.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 2.7e-173 612.8 622 57.6
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.0e-172 610.9 530 62.8
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.1e-172 608.6 612 55.1
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 7.4e-171 604.7 612 54.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 7.4e-171 604.7 610 54.3
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.1e-169 600.9 626 55.9
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.1e-169 600.9 615 55.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.5e-166 589.7 687 50.9
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.2e-165 587.4 600 55.0
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.6e-165 587.0 635 53.1
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 5.1e-164 582.0 629 53.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.0e-163 580.1 566 55.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.0e-163 580.1 620 54.4
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.7e-163 578.6 603 54.6
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 9.1e-161 571.2 612 53.3
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 4.2e-158 562.4 601 53.6
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.2e-158 561.6 616 54.2
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 7.2e-158 561.6 620 54.0
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.1e-157 560.1 631 54.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.3e-156 556.6 565 60.0
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.8e-156 554.7 582 55.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 5.7e-155 552.0 608 53.0
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.7e-155 551.2 608 53.5
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.3e-154 548.5 613 51.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.4e-153 547.4 612 54.1
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-153 547.4 587 53.7
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.7e-151 540.4 618 53.9
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.9e-151 539.7 619 50.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 8.5e-151 538.1 618 53.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 8.5e-151 538.1 621 51.5
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.1e-150 537.7 614 51.0
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 5.5e-150 535.4 622 51.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 5.5e-150 535.4 616 52.6
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 3.6e-149 532.7 619 52.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.6e-149 532.7 609 54.0
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.0e-148 529.6 625 51.4
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.1e-147 527.7 624 51.1
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.3e-147 526.2 616 51.9
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 3.3e-147 526.2 648 49.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 7.4e-147 525.0 613 53.2
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.8e-146 523.1 620 50.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 6.3e-146 521.9 628 49.5
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.1e-145 521.2 642 50.3
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.8e-145 520.4 606 50.5
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.2e-144 517.7 665 47.7
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.2e-144 517.7 665 47.7
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.0e-143 514.6 630 49.5
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 4.7e-141 505.8 581 52.8
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 6.1e-141 505.4 618 50.0
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.4e-139 499.6 623 50.4
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.4e-139 499.6 623 50.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 4.8e-138 495.7 619 50.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 3.1e-137 493.0 474 55.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 5.9e-136 488.8 628 48.6
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.8e-135 486.1 628 48.4
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.6e-133 480.7 597 48.9
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.7e-127 460.7 601 49.8
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.2e-125 454.5 602 48.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 6.1e-125 452.2 636 45.3
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 3.0e-124 449.9 623 49.0
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.5e-123 447.6 441 55.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.5e-123 447.6 615 49.3
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.6e-120 437.6 607 48.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 4.3e-118 429.5 406 56.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 5.6e-118 429.1 599 48.9
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 5.6e-118 429.1 563 48.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.2e-117 427.9 605 49.4
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 6.8e-116 422.2 416 59.4
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.1e-109 400.6 615 43.4
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.4e-107 393.3 357 58.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.7e-106 391.0 652 44.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 5.8e-83 312.8 542 38.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.8e-82 310.1 293 55.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 7.3e-78 295.8 705 33.2
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-70 271.9 180 75.6
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.2e-67 261.9 239 64.0
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.4e-57 228.4 463 37.4
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.3e-53 215.3 272 47.4
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.1e-52 212.2 479 31.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.6e-48 198.4 127 77.2
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 4.6e-48 196.8 275 40.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 5.0e-42 176.8 500 31.6
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 6.5e-42 176.4 148 65.5
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.2e-40 172.2 280 44.3
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 7.9e-40 169.5 129 64.3
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 8.0e-32 142.9 140 62.9
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.0e-31 142.5 485 27.6
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.8e-31 141.7 576 25.3
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.4e-30 137.1 113 61.1
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 9.7e-30 136.0 193 42.5
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.3e-29 135.6 98 69.4
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.7e-29 135.2 633 26.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.3e-29 133.3 168 47.0
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.0e-26 123.6 177 51.4
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.4e-22 110.5 75 69.3
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 9.8e-22 109.4 186 44.6
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.0e-18 99.4 135 40.7
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 5.5e-17 93.6 110 45.5
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.5e-17 93.6 50 88.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.3e-15 88.2 78 61.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.0e-14 85.1 90 44.4
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.6e-14 84.7 152 42.1
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 3.4e-14 84.3 70 62.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.2e-13 81.6 146 43.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.5e-11 74.3 80 57.5
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 3.8e-10 70.9 68 48.5
Solyc02g062813.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.0e-10 70.5 37 83.8


User provided reference genes

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