Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 1.0e-119 435.3 805 100.0
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 3.0e-50 204.5 812 85.0
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 3.8e-45 187.6 793 80.1
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.6e-43 182.2 186 79.0
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 4.7e-43 180.6 187 57.2
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 4.7e-43 180.6 187 57.8
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.6e-41 174.9 166 59.0
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 5.0e-37 160.6 164 56.7
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.8e-34 152.1 175 71.4
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 2.6e-33 148.3 180 71.1
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 2.0e-30 138.7 172 72.7
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 1.2e-27 129.4 175 67.4
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.7e-24 119.0 177 65.5
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.8e-24 117.5 177 65.0
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 4.1e-23 114.4 177 64.4
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.1e-23 114.4 177 64.4
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 1.2e-22 112.8 177 63.3
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 7.7e-22 110.2 178 58.4
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.7e-21 109.0 177 62.7
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 2.2e-21 108.6 134 44.8
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 2.9e-21 108.2 170 65.9
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 5.0e-21 107.5 164 42.7
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 6.5e-21 107.1 174 63.2
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 8.5e-21 106.7 168 64.9
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.9e-20 105.5 173 65.9
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 4.2e-20 104.4 140 44.3
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 4.2e-20 104.4 175 63.4
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.6e-19 102.4 176 61.9
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 2.1e-19 102.1 174 63.2
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 4.7e-19 100.9 177 63.3
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 6.1e-19 100.5 166 39.8
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 8.0e-19 100.1 165 63.6
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 1.4e-18 99.4 139 42.4
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 1.8e-18 99.0 174 38.5
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 4.0e-18 97.8 168 63.7
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 5.2e-18 97.4 167 65.3
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.2e-17 96.3 175 32.0
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 3.4e-17 94.7 183 55.2
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 4.4e-17 94.4 176 58.0
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 7.5e-17 93.6 166 60.2
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 1.7e-16 92.4 166 63.3
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.2e-16 92.0 148 41.2
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 2.8e-16 91.7 142 40.1
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.8e-16 91.7 171 59.6
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.8e-16 91.7 171 59.6
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 2.8e-16 91.7 171 59.6
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 3.7e-16 91.3 173 60.7
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 4.8e-16 90.9 163 65.0
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 6.3e-16 90.5 158 38.6
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 8.3e-16 90.1 169 60.9
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 8.3e-16 90.1 163 63.8
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 8.3e-16 90.1 168 62.5
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 1.1e-15 89.7 172 34.9
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 2.4e-15 88.6 166 62.7
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 3.1e-15 88.2 69 58.0
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 4.1e-15 87.8 180 56.7
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 9.1e-15 86.7 131 40.5
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.0e-14 85.5 184 58.2
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 2.3e-13 82.0 174 55.2
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 3.8e-13 81.3 173 35.3
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 3.8e-13 81.3 153 34.0
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 5.0e-13 80.9 165 35.8
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 1.1e-12 79.7 153 33.3
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 3.3e-12 78.2 175 54.9
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 3.3e-12 78.2 176 33.0
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 4.2e-12 77.8 168 60.7
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 7.2e-12 77.0 177 58.2
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.6e-11 75.9 143 36.4
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 2.1e-11 75.5 138 61.6
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.0e-10 73.2 127 37.8
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 1.4e-10 72.8 172 32.6
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 1.8e-10 72.4 118 37.3
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 3.0e-10 71.6 140 36.4
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 5.2e-10 70.9 132 36.4
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 6.8e-10 70.5 169 32.0
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.2e-09 69.7 173 59.0
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.0e-09 68.9 147 31.3
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 4.4e-09 67.8 85 40.0
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.7e-08 65.9 152 34.2
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 4.9e-08 64.3 53 50.9
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 6.3e-08 63.9 84 41.7
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 8.3e-08 63.5 163 57.7
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 1.1e-07 63.2 140 32.9
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 1.1e-07 63.2 131 34.4
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 1.4e-07 62.8 149 32.9
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.8e-07 62.4 141 34.8
Lj9P304T66 Lonicera japonica HOM05D007410 ORTHO05D009500 3.2e-07 61.6 176 56.2
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 5.4e-07 60.8 142 31.0
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 2.0e-06 58.9 175 56.0
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 4.5e-06 57.8 58 44.8
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 4.5e-06 57.8 53 52.8


User provided reference genes

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