Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 8.9e-54 213.4 110 100.0
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.5e-29 132.9 77 84.4
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.7e-28 129.4 71 88.7
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.9e-25 118.2 77 70.1
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.5e-24 116.3 77 68.8
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.3e-24 115.2 72 72.2
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 4.3e-24 114.8 74 74.3
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 2.8e-23 112.1 77 67.5
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.7e-23 111.3 77 68.8
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 8.1e-23 110.5 77 67.5
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 1.5e-21 106.3 77 63.6
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.5e-21 106.3 77 68.8
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 5.8e-21 104.4 77 66.2
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 5.8e-21 104.4 75 69.3
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 7.6e-21 104.0 77 66.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 7.6e-21 104.0 73 64.4
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.3e-20 103.2 74 66.2
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.3e-20 103.2 77 64.9
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.3e-20 103.2 77 59.7
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.3e-20 103.2 77 59.7
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.3e-20 103.2 77 59.7
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.7e-20 102.8 77 64.9
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.7e-20 102.8 77 66.2
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.7e-20 102.8 77 61.0
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.2e-20 102.4 77 64.9
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 2.2e-20 102.4 77 63.6
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 2.2e-20 102.4 77 64.9
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.2e-20 102.4 76 61.8
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.9e-20 102.1 77 64.9
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 2.9e-20 102.1 100 55.0
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 2.9e-20 102.1 77 68.8
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 2.9e-20 102.1 77 62.3
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 3.8e-20 101.7 77 63.6
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 3.8e-20 101.7 86 54.7
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 3.8e-20 101.7 95 55.8
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 6.4e-20 100.9 77 58.4
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 8.4e-20 100.5 77 63.6
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 8.4e-20 100.5 77 59.7
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 8.4e-20 100.5 77 62.3
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 8.4e-20 100.5 77 63.6
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.1e-19 100.1 74 64.9
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.1e-19 100.1 72 61.1
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.4e-19 99.8 77 63.6
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 1.4e-19 99.8 77 57.1
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.4e-19 99.8 77 59.7
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.9e-19 99.4 77 59.7
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.9e-19 99.4 71 67.6
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 1.9e-19 99.4 77 57.1
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.4e-19 99.0 72 62.5
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 2.4e-19 99.0 77 62.3
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-19 99.0 77 62.3
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-19 99.0 77 62.3
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-19 99.0 77 62.3
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-19 99.0 77 62.3
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 2.4e-19 99.0 71 63.4
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 3.2e-19 98.6 77 62.3
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 3.2e-19 98.6 77 62.3
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 3.2e-19 98.6 77 62.3
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 4.1e-19 98.2 77 61.0
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 4.1e-19 98.2 77 61.0
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 4.1e-19 98.2 77 59.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.4e-19 97.8 77 61.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 5.4e-19 97.8 77 59.7
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 7.1e-19 97.4 77 59.7
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 9.2e-19 97.1 77 59.7
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 9.2e-19 97.1 71 62.0
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 9.2e-19 97.1 72 58.3
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.2e-18 96.7 72 61.1
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.2e-18 96.7 77 57.1
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.2e-18 96.7 77 57.1
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.2e-18 96.7 77 61.0
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.2e-18 96.7 69 62.3
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.6e-18 96.3 72 66.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.6e-18 96.3 77 59.7
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.1e-18 95.9 71 64.8
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 2.1e-18 95.9 71 64.8
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 2.7e-18 95.5 72 61.1
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 3.5e-18 95.1 73 57.5
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 3.5e-18 95.1 81 55.6
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 3.5e-18 95.1 77 59.7
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 4.6e-18 94.7 72 58.3
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 6.0e-18 94.4 77 55.8
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 7.8e-18 94.0 73 58.9
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.0e-17 93.6 72 59.7
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.0e-17 93.6 72 56.9
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.3e-17 93.2 72 58.3
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.3e-17 93.2 77 55.8
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.3e-17 93.2 77 55.8
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.7e-17 92.8 72 58.3
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.7e-17 92.8 72 58.3
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 1.7e-17 92.8 72 58.3
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 2.3e-17 92.4 72 58.3
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 2.3e-17 92.4 72 58.3
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 2.3e-17 92.4 72 58.3
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.3e-17 92.4 72 58.3
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.3e-17 92.4 61 70.5
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 2.3e-17 92.4 69 62.3
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 3.0e-17 92.0 72 56.9
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 3.9e-17 91.7 78 55.1
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 3.9e-17 91.7 72 56.9
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.9e-17 91.7 69 59.4
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.9e-17 91.7 69 59.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 3.9e-17 91.7 72 55.6
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 5.1e-17 91.3 67 61.2
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 5.1e-17 91.3 67 61.2
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 6.6e-17 90.9 72 56.9
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 8.7e-17 90.5 75 56.0
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 8.7e-17 90.5 75 56.0
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 8.7e-17 90.5 76 56.6
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 8.7e-17 90.5 70 55.7
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 8.7e-17 90.5 69 59.4
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.1e-16 90.1 68 57.4
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 1.1e-16 90.1 67 59.7
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.1e-16 90.1 68 57.4
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.5e-16 89.7 77 54.5
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.9e-16 89.4 77 54.5
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.9e-16 89.4 77 54.5
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 2.5e-16 89.0 72 55.6
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.5e-16 89.0 76 55.3
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 3.3e-16 88.6 72 54.2
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 4.3e-16 88.2 77 51.9
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 4.3e-16 88.2 77 53.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.2e-15 86.7 72 54.2
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.6e-15 86.3 69 56.5
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 3.6e-15 85.1 77 51.9
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.8e-14 82.8 53 71.7
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 9.0e-14 80.5 74 50.0
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.0e-13 79.3 73 52.1
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.4e-13 78.6 80 50.0
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 4.4e-13 78.2 64 59.4
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 5.8e-13 77.8 48 75.0
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 9.9e-13 77.0 80 50.0
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.2e-12 75.9 56 64.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 3.5e-10 68.6 73 49.3
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.7e-09 66.2 50 56.0
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 3.0e-09 65.5 73 41.1
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.5e-08 63.2 65 44.6
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.3e-08 62.0 39 71.8
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 5.3e-06 54.7 39 71.8


User provided reference genes

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