Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.4e-186 654.8 326 100.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-166 590.1 316 94.6
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-160 568.2 316 91.5
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-158 562.8 316 90.8
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.1e-155 550.4 316 86.7
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 9.1e-155 550.4 316 86.7
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.9e-153 545.4 316 85.8
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.6e-151 539.7 317 85.2
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.6e-149 532.3 316 84.5
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 5.0e-145 518.1 314 83.1
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 6.7e-142 507.7 330 81.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-139 499.2 278 91.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 7.7e-138 494.2 318 78.3
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.7e-137 493.0 328 77.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 7.2e-136 487.6 316 77.5
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 7.2e-136 487.6 316 77.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 7.2e-136 487.6 299 80.6
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 9.4e-136 487.3 309 78.6
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.2e-135 486.9 318 77.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.1e-135 486.1 318 77.7
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.7e-135 485.7 316 77.5
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 6.1e-135 484.6 317 76.7
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.4e-134 483.4 299 80.6
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.4e-134 483.4 316 75.9
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.8e-134 483.0 316 76.6
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 5.2e-134 481.5 322 76.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 8.8e-134 480.7 316 77.5
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.0e-133 479.6 318 76.7
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 4.4e-133 478.4 305 77.4
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 6.3e-132 474.6 316 75.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 8.2e-132 474.2 316 76.6
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.4e-131 473.4 308 77.9
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.4e-131 472.6 309 76.4
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.1e-131 472.2 327 74.0
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 5.3e-131 471.5 301 78.7
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 7.0e-131 471.1 305 77.0
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.2e-130 470.3 316 75.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.7e-130 469.2 299 77.6
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 3.5e-130 468.8 316 75.6
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.5e-130 468.4 316 75.6
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.9e-130 468.0 316 75.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 5.9e-130 468.0 345 70.1
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 7.7e-130 467.6 299 77.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.0e-129 467.2 317 74.1
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.3e-129 466.8 316 76.3
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.2e-129 466.1 316 75.3
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 8.5e-129 464.2 299 76.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-128 463.8 319 73.4
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 4.2e-128 461.8 316 74.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 5.5e-128 461.5 283 80.6
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 5.5e-128 461.5 316 73.7
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.7e-127 459.1 307 74.6
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 3.6e-127 458.8 306 74.8
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 4.7e-127 458.4 316 73.1
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 6.1e-127 458.0 316 72.8
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 6.1e-127 458.0 319 73.0
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.8e-126 456.4 306 74.5
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 4.0e-126 455.3 316 72.8
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.0e-126 455.3 350 68.9
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.0e-125 453.0 282 79.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.0e-125 453.0 307 73.9
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 2.0e-125 453.0 305 74.4
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 5.7e-125 451.4 316 72.2
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 7.5e-125 451.1 315 72.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.7e-124 449.9 316 71.8
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.7e-124 449.9 305 74.4
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.2e-124 449.5 336 69.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 6.3e-124 448.0 301 74.1
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 8.3e-124 447.6 300 74.3
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.1e-123 445.7 299 72.6
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 5.4e-123 444.9 307 70.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 9.1e-123 444.1 357 65.3
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.6e-122 443.4 310 71.3
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.0e-122 443.0 316 70.3
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.0e-122 443.0 368 65.5
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 3.5e-122 442.2 316 69.9
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 5.9e-122 441.4 299 72.6
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.7e-122 441.0 306 71.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.9e-121 439.1 316 71.8
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.5e-120 436.0 338 67.2
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 7.2e-120 434.5 305 73.4
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.2e-119 433.7 299 70.2
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-118 430.6 249 87.1
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.0e-118 430.6 291 74.6
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.4e-118 430.3 308 71.4
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 5.2e-118 428.3 285 76.1
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 8.8e-118 427.6 299 71.2
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.2e-117 427.2 299 71.2
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 2.0e-117 426.4 298 69.1
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 9.8e-117 424.1 250 85.2
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 9.8e-117 424.1 297 69.4
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.3e-116 421.0 311 72.7
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 3.1e-115 419.1 283 73.5
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.0e-114 416.4 298 68.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 7.8e-114 414.5 299 68.2
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 7.8e-114 414.5 299 68.2
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 3.8e-113 412.1 299 68.2
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 5.0e-113 411.8 299 67.6
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 5.0e-113 411.8 298 67.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 6.6e-113 411.4 298 67.8
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.1e-112 410.6 299 67.6
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.5e-112 410.2 299 67.6
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 4.3e-112 408.7 344 64.2
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 5.6e-112 408.3 344 64.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 7.3e-112 407.9 299 66.2
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.8e-111 406.0 298 66.4
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.6e-109 399.4 249 79.9
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 6.4e-108 394.8 300 62.3
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.2e-107 392.5 313 68.7
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.2e-106 390.6 299 65.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.4e-102 377.1 306 65.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 3.4e-101 372.5 249 73.9
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.9e-92 342.8 301 55.5
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-91 339.0 258 73.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 2.8e-87 326.2 209 77.0
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-83 314.3 222 73.0
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.1e-83 312.4 205 76.1
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 5.4e-83 312.0 190 84.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-78 297.4 312 55.4
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.8e-69 265.4 334 44.6
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.4e-67 260.0 208 66.3
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.5e-66 256.1 185 70.3
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 4.5e-61 239.2 142 89.4
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 7.1e-59 231.9 167 71.3
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.2e-58 231.1 306 46.4
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-53 213.4 178 66.9
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 2.3e-49 200.3 318 38.4
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-42 177.6 90 96.7
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.4e-41 174.5 116 70.7
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-41 173.3 182 53.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-40 171.0 111 78.4
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 8.8e-33 145.2 78 91.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 8.8e-33 145.2 100 72.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-24 117.5 176 43.2
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.2e-20 104.0 77 71.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.5e-19 100.5 84 64.3
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 6.7e-17 92.4 67 70.1
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 5.9e-13 79.3 53 73.6
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-11 75.1 60 58.3
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-10 71.2 57 59.6
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 7.5e-08 62.4 39 66.7


User provided reference genes

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