Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 4.2e-178 627.9 305 100.0
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 8.4e-163 577.0 308 91.2
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.1e-162 576.6 308 90.9
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.0e-160 570.1 308 89.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.5e-147 524.2 310 84.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 7.9e-145 517.3 312 83.3
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.7e-142 509.6 291 82.1
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 5.3e-141 504.6 301 80.1
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.0e-139 500.4 298 79.2
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-139 499.6 307 79.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 5.0e-139 498.0 307 79.2
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.1e-138 496.9 308 77.9
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.2e-138 495.4 290 79.7
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 4.2e-138 495.0 297 79.5
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.2e-138 495.0 307 78.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.2e-137 493.4 308 77.6
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.1e-137 492.7 300 77.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 2.7e-137 492.3 301 77.7
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 4.7e-137 491.5 297 76.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 4.7e-137 491.5 303 75.6
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 6.1e-137 491.1 308 76.3
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 8.0e-137 490.7 303 79.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.0e-136 490.3 280 81.8
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.4e-136 490.0 308 76.9
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.4e-136 490.0 297 78.8
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.4e-136 490.0 298 77.9
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.3e-136 489.2 297 77.1
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-136 489.2 305 75.1
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.3e-136 489.2 297 78.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 3.0e-136 488.8 297 76.1
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 4.0e-136 488.4 305 75.4
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 5.2e-136 488.0 297 78.5
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 8.8e-136 487.3 308 75.3
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 8.8e-136 487.3 287 79.4
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.2e-135 486.9 305 76.7
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.5e-135 486.5 294 77.2
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.6e-135 485.7 297 77.1
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 3.3e-135 485.3 305 75.7
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 4.4e-135 485.0 305 74.8
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 4.4e-135 485.0 305 74.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 4.4e-135 485.0 296 77.0
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 5.7e-135 484.6 305 75.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 7.5e-135 484.2 308 76.0
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 9.7e-135 483.8 305 75.1
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.7e-134 483.0 293 76.8
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.8e-134 482.3 306 74.5
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.7e-134 481.9 301 77.1
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.8e-134 481.5 281 79.7
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.1e-133 480.3 308 75.6
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.4e-133 479.9 296 78.0
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.8e-133 479.6 295 76.6
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.4e-133 479.2 299 77.3
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 3.1e-133 478.8 308 74.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 4.1e-133 478.4 294 75.9
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.3e-133 478.0 298 75.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.3e-133 478.0 299 77.3
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 7.0e-133 477.6 301 76.4
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 7.0e-133 477.6 292 82.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 2.7e-132 475.7 302 75.2
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 3.5e-132 475.3 307 73.6
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 4.5e-132 474.9 293 76.5
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.0e-131 473.8 294 75.5
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.3e-131 473.4 298 75.8
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 2.2e-131 472.6 280 78.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.0e-131 471.5 292 77.7
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-130 469.5 296 74.7
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.9e-130 469.5 322 71.4
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 7.2e-130 467.6 293 74.7
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.4e-130 467.2 296 73.6
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.2e-129 466.8 298 74.5
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 8.0e-129 464.2 296 75.3
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 8.0e-129 464.2 269 79.9
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 8.0e-129 464.2 297 72.4
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 2.3e-128 462.6 311 72.3
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 3.0e-128 462.2 298 72.8
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.0e-128 462.2 260 81.5
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.2e-128 461.5 280 76.1
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.2e-127 460.3 298 70.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 4.8e-126 454.9 294 73.5
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 6.3e-126 454.5 318 70.1
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 6.3e-126 454.5 283 76.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.2e-124 450.3 401 58.9
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.6e-124 449.9 279 74.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.0e-124 449.5 297 71.7
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.9e-124 448.0 299 70.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.7e-123 446.4 298 71.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 6.1e-121 438.0 281 73.3
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 4.0e-120 435.3 309 70.9
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 8.6e-115 417.5 306 67.0
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 3.3e-114 415.6 246 79.7
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 2.1e-113 412.9 321 63.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 8.0e-113 411.0 295 68.1
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 8.0e-113 411.0 295 68.1
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.3e-112 409.5 245 78.0
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 4.0e-112 408.7 279 69.5
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 2.0e-111 406.4 296 67.6
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.2e-108 397.1 241 77.2
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.1e-104 382.5 212 83.5
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 5.8e-103 378.3 298 62.1
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 7.5e-103 377.9 211 83.9
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.9e-102 375.2 263 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.0e-100 369.8 252 69.8
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.7e-97 358.6 280 64.6
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.5e-95 351.3 242 71.5
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 9.8e-95 350.9 202 80.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 6.4e-94 348.2 202 79.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 2.3e-91 339.7 248 66.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.8e-73 279.6 305 51.8
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.4e-71 272.7 269 49.1
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.2e-70 270.0 202 65.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.2e-68 264.2 258 50.4
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 9.6e-66 254.6 270 51.1
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.1e-56 223.0 301 47.5
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.5e-55 220.7 262 45.8
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.3e-54 217.6 130 77.7
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.3e-54 217.6 176 61.4
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-52 210.7 147 72.1
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.8e-40 170.6 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 5.0e-38 162.5 162 56.2
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 3.0e-35 153.3 95 74.7
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 5.9e-31 139.0 81 75.3
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 8.5e-30 135.2 102 62.7
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 8.5e-30 135.2 66 86.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.5e-15 86.7 67 61.2
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.2e-13 80.1 56 66.1
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.0e-11 75.1 57 63.2
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.5e-07 59.7 33 75.8
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.9e-07 59.3 40 70.0


User provided reference genes

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