Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 4.6e-166 587.8 296 100.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.5e-144 514.2 296 86.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 8.5e-144 513.8 296 86.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 3.2e-135 485.3 295 84.7
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.6e-134 483.0 302 82.8
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.4e-114 414.8 305 70.2
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 8.6e-112 407.5 302 69.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 3.6e-110 402.1 298 68.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.0e-109 398.7 316 66.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.0e-109 398.7 298 67.1
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.4e-106 389.4 303 67.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.1e-106 388.7 313 64.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.4e-106 388.3 299 68.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 7.8e-105 384.4 305 66.2
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 8.6e-104 380.9 314 65.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.7e-102 375.2 263 70.7
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.4e-101 373.6 307 63.2
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.8e-101 373.2 307 62.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.0e-101 372.1 311 64.6
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.2e-100 370.5 284 67.3
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.5e-100 370.2 302 64.6
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 4.4e-100 368.6 258 70.2
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 9.9e-100 367.5 290 65.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.3e-99 367.1 300 63.7
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.9e-99 365.9 254 71.3
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.4e-98 363.6 225 82.2
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.4e-98 362.8 296 64.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 7.1e-98 361.3 255 69.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 9.2e-98 360.9 305 63.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 9.2e-98 360.9 301 62.1
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.6e-97 360.1 299 63.5
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.6e-97 360.1 285 65.6
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.1e-97 359.8 285 65.6
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.7e-97 359.4 288 66.0
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.7e-97 359.4 252 69.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 6.0e-97 358.2 303 62.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 7.8e-97 357.8 298 63.4
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.0e-96 357.5 303 64.4
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.0e-96 357.5 273 66.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.3e-96 357.1 293 64.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.7e-96 356.7 292 63.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.0e-96 355.9 297 63.3
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.1e-96 355.1 292 63.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 6.6e-96 354.8 306 62.4
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 6.6e-96 354.8 256 69.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 6.6e-96 354.8 280 65.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 8.6e-96 354.4 303 63.7
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 8.6e-96 354.4 303 63.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 8.6e-96 354.4 325 61.2
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 8.6e-96 354.4 325 61.2
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.1e-95 354.0 270 68.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.5e-95 353.6 254 69.7
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.9e-95 353.2 265 67.5
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 5.6e-95 351.7 255 67.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 7.3e-95 351.3 256 69.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 9.6e-95 350.9 285 61.8
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 4.7e-94 348.6 271 66.1
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 8.1e-94 347.8 272 64.3
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.1e-93 347.4 268 66.8
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.4e-93 347.1 282 63.1
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.4e-93 346.3 253 66.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.1e-93 345.9 306 61.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.0e-93 345.5 295 63.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.2e-92 344.0 271 65.3
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.2e-92 344.0 270 63.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.6e-92 342.8 304 61.5
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 5.8e-92 341.7 285 63.9
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.6e-92 341.3 297 60.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 9.9e-92 340.9 304 58.6
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-91 339.7 294 59.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 6.4e-91 338.2 281 63.3
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 8.4e-91 337.8 252 65.9
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-90 337.0 292 60.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.4e-90 336.3 241 69.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.4e-90 336.3 255 66.7
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.2e-90 335.5 266 62.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.2e-90 335.5 263 63.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.2e-90 335.5 236 69.9
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 5.4e-90 335.1 236 70.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.4e-90 335.1 263 62.7
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.2e-89 334.0 299 58.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-89 334.0 284 60.6
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-89 333.6 288 59.0
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.6e-89 333.6 288 59.0
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.5e-89 332.4 295 58.6
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.5e-89 332.4 255 66.7
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 7.8e-89 331.3 282 62.1
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.0e-88 330.9 268 61.6
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.0e-88 330.9 360 51.9
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.3e-88 330.5 286 59.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-88 330.5 288 59.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.7e-88 330.1 269 62.1
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.9e-88 328.9 266 62.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.9e-88 328.9 273 61.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 8.7e-88 327.8 315 56.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-87 327.4 282 61.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.5e-87 327.0 244 67.2
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.9e-87 326.6 266 60.5
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.9e-87 326.6 256 62.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.5e-87 326.2 275 60.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.3e-87 325.9 236 66.5
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 5.6e-87 325.1 228 69.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 9.6e-87 324.3 269 60.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-86 323.6 282 58.5
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.1e-86 323.2 295 56.6
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.1e-86 323.2 268 59.3
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.6e-86 322.4 282 58.2
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 4.8e-86 322.0 261 60.5
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-85 320.5 294 55.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.4e-85 320.5 294 55.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.0e-84 316.6 294 55.4
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.6e-84 316.2 236 64.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 8.4e-83 311.2 246 63.4
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.9e-82 310.1 269 58.7
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 7.9e-81 304.7 246 59.3
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-80 304.3 252 60.7
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 3.0e-80 302.8 217 70.0
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.7e-80 301.2 268 61.6
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 8.7e-80 301.2 371 47.4
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.3e-78 297.4 227 65.6
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.1e-77 294.3 239 65.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.5e-76 290.4 256 59.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.4e-76 289.3 269 55.8
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 7.6e-76 288.1 241 59.3
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.7e-75 287.0 268 55.6
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.9e-75 286.2 314 50.6
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.4e-74 283.1 287 53.7
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.5e-74 282.0 325 51.1
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.0e-73 278.5 295 52.2
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 6.0e-73 278.5 266 53.4
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.0e-72 276.2 262 60.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.9e-72 275.8 327 49.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 7.6e-60 235.0 221 53.8
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.1e-57 225.3 166 62.7
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.0e-56 224.6 280 43.2
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-56 223.8 296 42.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.1e-53 214.5 253 43.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.1e-53 214.5 427 34.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.8e-53 213.8 236 44.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-52 210.7 240 45.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.4e-50 204.1 187 58.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 7.9e-49 198.4 135 70.4
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 9.7e-47 191.4 282 40.4
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 3.8e-43 179.5 143 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.7e-38 164.1 189 45.0
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 7.7e-36 155.2 123 61.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.0e-28 130.6 155 45.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 4.1e-21 106.3 73 69.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.7e-20 102.1 76 64.5
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.7e-19 100.9 93 45.2
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.7e-15 85.9 73 54.8
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.1e-13 79.7 208 30.3
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-12 78.2 69 56.5
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.7e-11 74.3 70 44.3
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.6e-09 66.6 51 58.8
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 1.4e-08 64.7 192 28.1
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 2.3e-08 63.9 199 29.1
Oeu028866.1 Olea europaea HOM05D002234 ORTHO05D002254 5.2e-08 62.8 195 30.8
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.8e-08 62.4 50 64.0
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 6.8e-08 62.4 212 25.0
MSTRG.12171 Avicennia marina HOM05D002234 ORTHO05D002254 8.9e-08 62.0 199 26.1
Nitab4.5_0000529g0070 Nicotiana tabacum HOM05D002234 ORTHO05D002254 4.4e-07 59.7 194 27.8
Nitab4.5_0000809g0050 Nicotiana tabacum HOM05D002234 ORTHO05D002254 4.4e-07 59.7 194 27.8


User provided reference genes

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