Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.3e-55 219.5 113 100.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.2e-45 186.4 116 86.2
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.2e-45 186.4 116 86.2
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.2e-42 176.4 101 92.1
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.1e-38 161.4 109 79.8
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.5e-35 152.1 100 80.0
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 8.0e-34 147.1 93 84.9
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.8e-33 143.7 116 70.7
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.1e-26 120.9 113 54.9
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.9e-25 117.1 107 56.1
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.5e-24 116.3 109 55.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.4e-24 115.2 108 55.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.5e-24 114.0 103 57.3
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.8e-24 113.6 91 69.2
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.2e-23 112.5 111 51.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.2e-23 112.5 111 55.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.2e-23 112.5 107 50.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 4.9e-23 111.3 109 49.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.4e-22 109.8 109 46.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.4e-22 109.8 97 59.8
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.1e-22 108.2 109 49.5
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 5.4e-22 107.8 112 50.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.0e-22 107.5 101 58.4
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.7e-21 105.5 112 46.4
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 3.5e-21 105.1 106 49.1
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.5e-21 105.1 113 51.3
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.5e-21 105.1 113 51.3
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.6e-21 104.8 114 50.9
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-21 104.8 107 47.7
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.9e-21 104.4 102 55.9
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 7.8e-21 104.0 106 46.2
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.8e-21 104.0 112 45.5
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 7.8e-21 104.0 107 47.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.0e-20 103.6 105 54.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.3e-20 103.2 106 48.1
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.7e-20 102.8 110 47.3
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.3e-20 102.4 112 45.5
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 3.0e-20 102.1 89 65.2
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.9e-20 101.7 102 49.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 6.6e-20 100.9 104 52.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 8.6e-20 100.5 99 47.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 8.6e-20 100.5 107 45.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.1e-19 100.1 101 50.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-19 99.8 93 53.8
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.9e-19 99.4 110 47.3
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.3e-19 98.2 103 54.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.6e-19 97.8 113 46.9
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 5.6e-19 97.8 89 53.9
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.6e-19 97.8 111 49.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 9.5e-19 97.1 107 49.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.1e-18 95.9 105 49.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.8e-18 95.5 112 50.0
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.8e-18 95.5 111 46.8
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.8e-18 95.5 111 46.8
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.6e-18 95.1 92 52.2
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-18 95.1 90 48.9
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.6e-18 95.1 111 48.6
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.7e-18 94.7 89 50.6
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.7e-18 94.7 103 47.6
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.2e-18 94.4 92 53.3
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.1e-17 93.6 90 60.0
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.4e-17 93.2 113 50.4
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.8e-17 92.8 113 45.1
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.8e-17 92.8 104 48.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 5.2e-17 91.3 95 44.2
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.2e-17 91.3 94 51.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.2e-17 91.3 88 46.6
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.2e-17 91.3 88 46.6
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.2e-17 91.3 89 56.2
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 6.8e-17 90.9 98 46.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 8.9e-17 90.5 114 43.9
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 8.9e-17 90.5 104 46.2
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.2e-16 90.1 109 46.8
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.2e-16 90.1 112 40.2
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.2e-16 90.1 113 43.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.5e-16 89.7 99 46.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.6e-16 89.0 107 44.9
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.6e-16 89.0 114 40.4
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.4e-16 88.6 94 50.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 5.8e-16 87.8 112 38.4
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.5e-16 87.4 91 52.7
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 7.5e-16 87.4 102 46.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 9.8e-16 87.0 89 46.1
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-15 86.7 94 48.9
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.3e-15 86.7 89 49.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.7e-15 86.3 108 46.3
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.7e-15 86.3 108 42.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 115 43.5
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.4e-15 84.3 96 49.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 8.3e-15 84.0 89 47.2
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.9e-14 82.8 114 43.0
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.9e-14 82.8 109 48.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.1e-14 81.6 115 40.9
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.4e-14 81.3 115 40.9
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 115 40.9
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.6e-13 78.2 116 40.5
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 6.0e-13 77.8 73 52.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 7.8e-13 77.4 96 41.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-12 76.6 94 41.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.3e-12 76.6 104 39.4
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.3e-12 75.9 104 39.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.3e-12 75.9 98 44.9
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 6.6e-12 74.3 103 38.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 8.6e-12 73.9 95 46.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-11 73.2 88 51.1
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.5e-11 72.4 69 58.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.6e-11 71.2 71 49.3
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 9.5e-11 70.5 68 51.5
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.6e-10 69.7 105 37.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.8e-09 66.2 92 44.6
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 1.8e-09 66.2 98 38.8
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 4.0e-09 65.1 93 44.1
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.5e-08 63.2 112 36.6
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.5e-08 63.2 64 50.0
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 9.9e-08 60.5 99 36.4
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.7e-07 59.7 67 47.8
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-07 59.3 99 36.4
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.2e-07 59.3 99 36.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.2e-07 59.3 99 36.4
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 4.9e-07 58.2 123 31.7
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.9e-07 58.2 108 34.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 6.4e-07 57.8 113 37.2
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 6.4e-07 57.8 121 27.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 6.4e-07 57.8 78 41.0
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 8.3e-07 57.4 113 35.4
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 8.3e-07 57.4 124 29.8
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 8.3e-07 57.4 99 36.4
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 8.3e-07 57.4 114 36.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-06 56.6 114 34.2
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.4e-06 56.6 99 35.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.9e-06 56.2 115 32.2
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.9e-06 56.2 115 32.2
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.9e-06 56.2 123 30.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.4e-06 55.8 115 31.3
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.4e-06 55.8 100 37.0
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.4e-06 55.8 115 31.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-06 55.1 100 36.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.1e-06 55.1 100 36.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 5.4e-06 54.7 126 31.0
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 5.4e-06 54.7 131 29.8
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 7.1e-06 54.3 114 33.3
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 7.1e-06 54.3 99 33.3
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.1e-06 54.3 99 33.3
arahy.Tifrunner.gnm1.ann1.6X23CA Arachis hypogaea HOM05D005226 ORTHO05D004666 9.2e-06 53.9 77 46.8
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 9.2e-06 53.9 99 37.4
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 9.2e-06 53.9 99 33.3
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 9.2e-06 53.9 99 33.3


User provided reference genes

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