Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.2e-266 922.5 447 100.0
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 2.6e-200 702.2 447 81.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 3.4e-197 691.8 451 80.3
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.5e-197 691.4 464 78.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.1e-195 686.8 451 79.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.2e-188 662.5 447 76.5
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 9.8e-160 567.4 448 65.2
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.2e-159 566.2 449 65.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 6.4e-159 564.7 450 66.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.1e-155 553.9 449 65.5
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.6e-155 551.6 448 64.7
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.3e-153 546.2 449 63.5
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.2e-152 543.9 448 65.4
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.4e-152 542.3 448 64.3
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 7.5e-152 541.2 447 63.1
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.7e-151 540.0 448 63.8
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.2e-151 539.7 448 63.2
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.9e-151 539.3 448 63.2
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.9e-151 539.3 448 63.8
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 4.9e-151 538.5 484 60.3
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 2.4e-150 536.2 448 62.7
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 3.2e-150 535.8 451 62.5
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 5.4e-150 535.0 448 63.8
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 9.2e-150 534.3 453 62.5
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.6e-149 533.5 448 62.5
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.6e-149 533.5 448 62.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 3.5e-149 532.3 454 62.3
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.6e-149 531.9 445 63.8
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.6e-149 531.9 445 63.8
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 7.8e-149 531.2 451 61.9
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.3e-148 529.6 448 61.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.0e-148 529.3 448 62.9
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.9e-148 528.9 449 61.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.1e-147 527.3 451 61.9
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.9e-147 526.6 447 61.7
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.5e-147 526.2 445 61.3
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 3.3e-147 525.8 448 60.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 9.5e-147 524.2 445 63.6
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 9.5e-147 524.2 447 62.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.1e-146 523.1 450 62.9
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.3e-145 519.6 450 62.0
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.8e-145 518.1 444 62.6
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 9.9e-144 514.2 448 60.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.3e-143 513.8 449 60.4
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.7e-143 512.3 449 59.9
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 4.9e-143 511.9 449 59.9
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.4e-142 509.6 449 59.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.4e-142 508.4 448 60.5
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 7.1e-142 508.1 444 61.3
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 7.1e-142 508.1 444 59.5
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 9.2e-142 507.7 501 56.7
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.2e-141 507.3 433 60.5
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.1e-141 506.5 449 59.5
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.0e-140 504.2 433 60.0
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.0e-140 504.2 448 59.6
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.3e-140 503.8 449 58.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.3e-140 503.1 431 59.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 6.6e-140 501.5 433 59.4
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-138 497.3 442 58.6
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.6e-138 496.9 432 59.7
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.1e-138 496.5 431 59.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 8.1e-138 494.6 431 61.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.1e-137 494.2 447 58.4
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.8e-137 493.4 411 63.5
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 3.1e-137 492.7 432 59.5
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 6.8e-137 491.5 432 59.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 8.9e-137 491.1 432 59.5
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.2e-136 490.7 447 57.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.6e-136 489.6 447 58.6
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 4.4e-136 488.8 448 56.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.2e-135 486.5 415 62.9
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.2e-135 486.5 416 63.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.2e-135 486.5 449 57.0
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 3.8e-135 485.7 476 56.5
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.9e-134 483.4 450 56.2
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.4e-134 483.0 279 86.4
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 3.2e-134 482.6 442 56.3
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 7.1e-134 481.5 416 63.2
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 9.2e-134 481.1 445 56.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.6e-133 480.3 448 58.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.5e-133 479.2 445 58.9
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 2.3e-132 476.5 447 58.2
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.3e-131 472.6 446 58.1
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 4.3e-131 472.2 439 58.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 5.6e-131 471.9 445 58.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.8e-130 469.5 357 66.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.8e-130 469.5 475 55.4
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.1e-129 467.6 445 57.3
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.4e-129 467.2 460 56.5
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.4e-129 466.5 445 57.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 5.8e-128 461.8 442 56.8
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.9e-127 459.5 440 57.0
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 4.2e-126 455.7 314 71.7
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.7e-124 450.3 316 70.3
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 6.9e-121 438.3 445 55.3
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.4e-118 430.6 317 67.2
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.6e-114 417.2 441 52.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.7e-114 416.0 438 52.5
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-112 411.0 334 61.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.4e-110 404.1 315 62.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.4e-110 404.1 315 62.5
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.7e-109 399.8 316 61.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.8e-106 389.8 318 63.2
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 8.2e-106 388.3 443 49.0
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 9.0e-105 384.8 444 49.8
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.6e-104 383.3 341 57.8
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.6e-104 383.3 448 48.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 3.5e-101 372.9 442 46.2
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 3.9e-100 369.4 448 46.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.3e-97 359.0 320 56.6
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-94 350.9 312 59.0
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.9e-86 323.9 294 58.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.4e-75 285.4 183 68.3
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.1e-73 279.6 279 56.6
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.1e-65 253.1 381 40.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.3e-63 248.1 457 35.7
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 5.2e-52 209.5 427 33.5
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.4e-49 199.5 236 41.1
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.3e-46 189.9 260 46.2
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 7.5e-43 179.1 139 68.3
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.3e-42 178.3 583 27.8
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 3.2e-41 173.7 227 45.8
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.3e-26 122.5 132 55.3
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.6e-23 112.8 152 46.7
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.4e-20 104.4 147 44.9
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.9e-20 102.4 123 43.1
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 2.0e-19 101.3 83 59.0
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.8e-19 99.8 88 58.0
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 4.9e-18 96.7 151 40.4
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.4e-12 77.8 60 65.0
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.1e-08 64.7 39 71.8
CAN.G610.29 Capsicum annuum HOM05D002670 ORTHO05D003079 3.9e-07 60.5 46 65.2
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.6e-07 59.7 62 58.1
CAN.G1711.17 Capsicum annuum HOM05D000610 ORTHO05D002583 1.5e-06 58.5 31 77.4
CAN.G2816.1 Capsicum annuum HOM05D000346 ORTHO05D011742 2.5e-06 57.8 29 79.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 5.6e-06 56.6 126 36.5


User provided reference genes

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