Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.1e-194 682.2 349 100.0
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.1e-169 600.1 344 87.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 4.5e-168 594.7 349 86.2
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 6.5e-167 590.9 349 85.4
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.3e-164 582.4 349 84.0
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.5e-158 562.4 348 80.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.6e-157 558.1 335 83.0
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 9.8e-131 470.7 347 69.5
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.2e-130 469.5 347 68.0
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-129 467.2 347 66.9
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.6e-128 463.4 348 66.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.5e-128 462.2 318 71.1
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 4.2e-126 455.3 349 65.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 9.5e-126 454.1 350 64.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 9.5e-126 454.1 351 64.1
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 9.5e-126 454.1 349 64.2
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 8.0e-125 451.1 352 65.3
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 6.8e-124 448.0 378 62.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 4.4e-123 445.3 350 65.4
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 5.7e-123 444.9 352 63.9
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.5e-123 444.5 352 64.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 9.8e-123 444.1 352 62.8
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.2e-122 443.0 352 64.5
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 4.9e-122 441.8 352 63.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.9e-122 441.8 352 63.9
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.2e-121 437.6 418 56.0
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-120 437.2 352 63.6
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.6e-120 436.8 351 62.7
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 2.0e-120 436.4 357 63.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.5e-120 435.6 355 63.1
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 4.5e-120 435.3 342 63.2
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 7.8e-120 434.5 357 60.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 2.3e-119 433.0 349 60.2
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 6.6e-119 431.4 348 61.5
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.3e-118 429.1 353 61.5
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.3e-118 429.1 353 61.5
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 7.3e-118 427.9 353 60.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 2.1e-117 426.4 354 61.6
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 4.7e-117 425.2 350 60.3
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 6.1e-117 424.9 352 61.1
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.0e-116 424.1 356 61.0
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.0e-116 424.1 351 61.8
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.0e-116 424.1 352 60.8
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.8e-116 423.3 349 61.0
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.3e-116 422.9 351 62.7
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 5.2e-116 421.8 353 59.5
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 5.2e-116 421.8 352 60.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-115 420.6 352 61.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.4e-115 419.1 352 60.5
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 5.7e-115 418.3 351 59.8
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 7.5e-115 417.9 349 59.0
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 8.3e-114 414.5 350 59.7
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.2e-113 412.5 352 60.2
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 7.0e-113 411.4 350 60.0
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 7.0e-113 411.4 349 58.2
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 7.0e-113 411.4 348 59.8
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 9.2e-113 411.0 356 60.4
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.2e-112 410.6 348 58.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.6e-112 410.2 349 58.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.6e-112 410.2 350 59.1
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.0e-112 409.8 346 59.5
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.7e-112 409.5 350 59.7
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.6e-112 408.7 352 57.4
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.3e-111 407.1 357 57.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 3.0e-111 406.0 355 58.6
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 3.9e-111 405.6 351 60.7
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 3.9e-111 405.6 351 61.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 5.0e-111 405.2 351 59.3
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.9e-110 403.3 347 58.2
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 2.5e-110 402.9 352 58.8
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 2.1e-109 399.8 351 59.5
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 2.8e-109 399.4 347 58.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.6e-109 399.1 346 56.6
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 4.7e-109 398.7 347 58.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 8.9e-108 394.4 349 58.2
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.0e-107 393.3 347 57.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 5.8e-107 391.7 350 54.6
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 7.5e-107 391.3 352 57.7
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.3e-106 387.9 298 66.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.0e-104 383.3 360 56.1
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 4.6e-104 382.1 359 55.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.9e-102 376.7 329 57.8
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.8e-100 370.2 348 54.3
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.3e-100 369.8 290 61.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 4.4e-99 365.5 319 57.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 9.2e-97 357.8 356 52.5
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.2e-96 357.5 362 52.2
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 6.0e-96 355.1 352 54.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.3e-95 354.0 360 50.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.3e-95 353.2 281 63.0
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.0e-95 352.8 352 51.4
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 2.3e-92 343.2 360 52.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.1e-92 342.8 361 51.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.0e-92 342.4 359 49.9
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.5e-91 340.5 360 50.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 3.4e-91 339.3 359 51.0
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 5.8e-91 338.6 358 50.8
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.9e-90 336.3 358 50.6
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 8.4e-90 334.7 329 53.2
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.9e-89 333.6 359 50.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.2e-88 330.9 359 49.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.5e-86 323.9 265 58.9
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.2e-85 320.9 376 46.0
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.1e-84 317.8 389 44.2
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.9e-84 315.1 378 46.6
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.1e-81 305.1 360 46.1
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.9e-78 297.0 221 65.2
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.4e-74 282.0 352 47.4
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.5e-70 270.8 403 39.7
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-69 265.4 185 70.3
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.2e-67 261.2 329 43.2
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.8e-67 258.8 198 65.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 3.5e-64 249.6 196 64.3
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 2.3e-63 246.9 278 48.6
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.9e-63 246.1 417 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.1e-61 240.4 403 37.5
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-54 218.0 266 46.2
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 9.0e-52 208.4 234 47.0
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.7e-40 170.2 129 65.9
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.3e-39 167.2 320 33.8
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.0e-35 154.1 313 32.9
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-34 151.4 121 62.8
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 2.2e-34 150.6 335 33.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.0e-32 142.1 135 52.6
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.4e-31 141.4 94 70.2
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.8e-29 133.7 166 46.4
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.6e-27 127.9 363 28.4
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 9.7e-22 108.6 81 66.7
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 5.3e-20 102.8 123 45.5
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.6e-16 91.3 72 62.5
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 4.7e-16 89.7 94 53.2
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 5.9e-11 72.8 438 21.9
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.0e-10 72.0 46 69.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.1e-08 64.3 112 37.5
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 6.1e-08 62.8 153 30.1
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.5e-06 58.2 41 68.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 7.5e-06 55.8 81 38.3


User provided reference genes

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