Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 9.3e-284 979.5 504 100.0
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 3.0e-266 921.4 504 89.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 7.4e-265 916.8 504 89.5
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 1.3e-256 889.4 518 86.5
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.6e-241 838.6 506 84.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 4.3e-228 794.7 511 76.7
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 7.5e-225 783.9 504 77.0
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 6.4e-224 780.8 506 75.7
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.6e-219 766.1 514 74.3
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.7e-216 755.0 513 73.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.4e-215 751.1 505 72.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 6.2e-211 737.6 509 71.1
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.0e-209 732.6 503 71.2
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.4e-209 731.9 507 70.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 4.4e-209 731.5 503 71.0
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 7.6e-209 730.7 514 71.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 7.6e-209 730.7 509 71.1
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.1e-207 726.9 517 70.2
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 3.2e-207 725.3 504 70.6
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 3.2e-207 725.3 508 69.5
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.4e-207 724.5 503 70.4
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.2e-206 723.4 508 70.1
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 6.0e-206 721.1 511 68.9
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.0e-205 718.8 508 70.9
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 5.1e-205 718.0 508 70.3
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 8.6e-205 717.2 507 69.8
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.5e-204 715.7 507 69.4
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 2.5e-204 715.7 507 69.8
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.6e-204 714.5 509 70.7
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.6e-204 713.8 517 68.5
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.6e-203 713.0 521 68.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 2.1e-203 712.6 506 70.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.8e-203 712.2 509 70.5
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.6e-203 711.8 505 68.5
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 6.2e-203 711.1 519 67.2
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.4e-202 709.9 510 69.2
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 2.4e-202 709.1 510 69.2
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 4.0e-202 708.4 504 68.8
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.9e-202 707.2 509 69.9
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.6e-201 705.7 519 69.2
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 3.4e-201 705.3 504 69.4
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 5.8e-201 704.5 504 68.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 7.6e-201 704.1 505 66.5
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.6e-201 704.1 509 69.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 9.9e-201 703.7 510 68.6
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-200 703.4 509 69.5
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.9e-200 702.2 506 67.6
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.9e-200 701.4 510 68.4
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 6.4e-200 701.0 516 69.0
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 7.1e-199 697.6 519 66.3
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 4.6e-198 694.9 515 66.4
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 4.6e-198 694.9 538 66.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 6.0e-198 694.5 564 63.3
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.0e-197 692.2 485 69.7
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 6.6e-197 691.0 524 65.3
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 2.5e-196 689.1 515 69.5
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 4.3e-196 688.3 506 67.4
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.6e-196 688.0 364 94.0
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.1e-194 682.2 533 66.4
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.2e-193 680.2 525 66.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 3.4e-193 678.7 501 67.5
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.9e-192 675.6 505 67.1
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 5.3e-186 654.8 497 66.2
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.5e-185 653.3 396 80.1
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.6e-185 652.5 592 60.3
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.4e-184 647.9 502 63.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 5.5e-183 644.8 504 64.7
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.2e-182 643.7 515 61.6
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.5e-182 642.1 507 64.1
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 7.9e-182 641.0 504 64.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.8e-181 639.8 514 60.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 3.0e-181 639.0 553 61.3
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 9.0e-178 627.5 519 60.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.5e-177 626.7 517 63.2
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 3.4e-177 625.5 513 62.6
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.7e-176 623.2 533 60.0
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.9e-176 621.7 512 62.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 6.5e-176 621.3 557 59.1
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.4e-175 620.2 512 62.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.4e-175 620.2 512 62.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.4e-175 620.2 512 62.5
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.9e-175 619.8 512 62.5
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.2e-175 618.6 517 62.3
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.2e-175 618.6 514 60.3
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 9.6e-172 607.4 502 60.4
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.8e-171 605.9 466 64.6
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.5e-169 600.1 466 64.6
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.2e-167 592.4 459 64.7
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-162 577.4 464 70.9
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.0e-157 560.8 353 77.6
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.4e-154 549.7 411 66.2
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 3.5e-137 492.7 380 67.1
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 5.9e-137 491.9 507 54.4
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.1e-134 483.4 491 57.6
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.5e-119 433.3 284 76.8
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.0e-112 409.1 545 43.3
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 3.2e-106 389.8 254 76.4
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 1.6e-105 387.5 524 42.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 7.8e-105 385.2 514 40.7
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.3e-96 357.1 255 71.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 2.5e-95 353.6 260 66.2
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.5e-87 327.8 551 35.6
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 6.4e-75 285.8 204 70.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 6.4e-75 285.8 235 61.7
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.9e-74 284.3 460 42.8
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.0e-72 276.9 222 68.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.9e-72 276.6 203 63.1
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.9e-67 259.6 240 57.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.4e-66 258.1 259 44.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 7.6e-60 235.7 221 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.8e-59 233.4 239 46.9
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.8e-53 214.5 169 60.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.3e-53 213.0 480 29.4
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 3.7e-46 190.3 303 38.6
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 5.3e-45 186.4 180 52.8
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-41 174.9 248 44.0
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-40 171.4 146 58.9
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-35 155.6 258 40.3
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 2.7e-33 147.5 526 29.1
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.1e-29 135.6 83 69.9
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.2e-28 132.1 82 75.6
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 5.9e-28 129.8 79 70.9
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.2e-25 122.1 163 43.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.7e-23 112.5 97 56.7
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.9e-20 103.2 121 50.4
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 5.0e-19 100.1 126 46.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 4.0e-16 90.5 192 37.0
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.4e-13 82.0 52 59.6
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-08 65.9 31 90.3
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 6.3e-06 56.6 40 52.5
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 8.3e-06 56.2 129 33.3


User provided reference genes

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