Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 2.8e-165 585.1 280 100.0
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 5.9e-46 188.7 210 54.3
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 7.3e-36 155.2 100 80.0
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 1.6e-35 154.1 104 76.9
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.8e-35 153.3 75 97.3
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 9.8e-33 144.8 78 92.3
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.4e-31 140.2 96 76.0
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 8.1e-27 125.2 96 66.7
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 6.8e-26 122.1 100 66.0
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 6.8e-26 122.1 108 61.1
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 8.9e-26 121.7 100 64.0
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.6e-25 120.2 100 64.0
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.6e-25 120.2 100 64.0
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 2.6e-25 120.2 110 59.1
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 3.4e-25 119.8 100 64.0
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 4.4e-25 119.4 100 64.0
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 4.4e-25 119.4 100 64.0
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 5.8e-25 119.0 96 64.6
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 7.6e-25 118.6 100 65.0
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 7.6e-25 118.6 100 65.0
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 9.9e-25 118.2 96 64.6
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 9.9e-25 118.2 75 77.3
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-24 117.9 100 63.0
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-24 117.9 100 63.0
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 1.3e-24 117.9 100 62.0
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.7e-24 117.5 100 64.0
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.7e-24 117.5 105 60.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.7e-24 117.5 100 64.0
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.7e-24 117.5 93 61.3
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 2.2e-24 117.1 102 61.8
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.2e-24 117.1 100 63.0
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 2.2e-24 117.1 100 63.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.9e-24 116.7 96 63.5
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.9e-24 116.7 100 64.0
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.7e-24 116.3 105 59.0
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.7e-24 116.3 105 59.0
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.7e-24 116.3 90 65.6
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.7e-24 116.3 90 65.6
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 3.7e-24 116.3 90 65.6
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.7e-24 116.3 117 53.8
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.9e-24 115.9 96 62.5
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 4.9e-24 115.9 75 73.3
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 6.4e-24 115.5 96 62.5
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 6.4e-24 115.5 96 62.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 6.4e-24 115.5 102 61.8
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 6.4e-24 115.5 96 62.5
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 8.4e-24 115.2 100 63.0
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 1.1e-23 114.8 96 62.5
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-23 114.8 95 63.2
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-23 114.8 95 63.2
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.1e-23 114.8 95 63.2
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.1e-23 114.8 95 63.2
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 1.1e-23 114.8 90 64.4
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.1e-23 114.8 100 60.0
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.1e-23 114.8 75 74.7
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.1e-23 114.8 100 61.0
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 1.4e-23 114.4 100 62.0
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.4e-23 114.4 100 62.0
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.4e-23 114.4 90 66.7
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.4e-23 114.4 100 60.0
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.4e-23 114.4 90 66.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.4e-23 114.4 102 61.8
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.4e-23 114.4 100 62.0
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 1.9e-23 114.0 75 74.7
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 1.9e-23 114.0 75 73.3
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.4e-23 113.6 75 73.3
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.4e-23 113.6 87 65.5
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.4e-23 113.6 100 63.0
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.4e-23 113.6 100 61.0
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.2e-23 113.2 80 68.8
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 3.2e-23 113.2 95 64.2
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 3.2e-23 113.2 90 64.4
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 4.1e-23 112.8 75 72.0
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 4.1e-23 112.8 96 63.5
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 4.1e-23 112.8 100 62.0
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 4.1e-23 112.8 82 68.3
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 5.4e-23 112.5 100 60.0
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 9.2e-23 111.7 75 70.7
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.2e-22 111.3 99 62.6
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 1.2e-22 111.3 100 58.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.2e-22 111.3 100 59.0
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.2e-22 111.3 75 69.3
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.6e-22 110.9 75 70.7
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.6e-22 110.9 90 63.3
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 1.6e-22 110.9 100 59.0
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.1e-22 110.5 101 58.4
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 2.1e-22 110.5 96 61.5
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 2.1e-22 110.5 96 59.4
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 2.7e-22 110.2 96 60.4
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 2.7e-22 110.2 75 68.0
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 3.5e-22 109.8 75 69.3
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 3.5e-22 109.8 100 58.0
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 4.6e-22 109.4 75 69.3
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 4.6e-22 109.4 134 48.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 4.6e-22 109.4 75 69.3
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 7.8e-22 108.6 100 60.0
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 7.8e-22 108.6 95 62.1
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-21 108.2 75 68.0
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.0e-21 108.2 150 44.0
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-21 107.8 75 68.0
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.7e-21 107.5 100 56.0
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.7e-21 107.5 75 69.3
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.7e-21 107.5 90 62.2
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 3.0e-21 106.7 96 58.3
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-21 106.7 105 55.2
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 3.0e-21 106.7 90 63.3
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.9e-21 106.3 69 73.9
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 5.1e-21 105.9 118 49.2
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 6.6e-21 105.5 90 63.3
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 6.6e-21 105.5 90 62.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 6.6e-21 105.5 75 69.3
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 6.6e-21 105.5 100 58.0
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 4.3e-20 102.8 100 57.0
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 5.6e-20 102.4 96 60.4
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 9.6e-20 101.7 102 53.9
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.8e-19 100.1 74 67.6
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 6.2e-19 99.0 96 57.3
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.8e-18 97.4 96 56.2
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.8e-18 97.4 96 56.2
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.4e-18 97.1 95 57.9
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.0e-17 94.0 75 61.3
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 4.4e-17 92.8 73 67.1
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 5.8e-17 92.4 74 60.8
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 2.9e-16 90.1 58 70.7
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 3.2e-15 86.7 100 48.0
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 2.7e-14 83.6 54 72.2
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 8.7e-13 78.6 95 48.4
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 8.7e-13 78.6 95 48.4
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.9e-12 77.4 75 50.7
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 3.6e-11 73.2 45 75.6
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 6.2e-11 72.4 86 52.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 1.8e-10 70.9 95 46.3
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 6.4e-08 62.4 40 72.5
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.1e-07 61.6 60 56.7
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 1.6e-06 57.8 76 40.8
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 7.9e-06 55.5 55 54.5


User provided reference genes

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