Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 3.6e-97 358.2 180 100.0
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 6.5e-78 294.3 201 78.6
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 7.1e-77 290.8 202 76.7
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 2.6e-71 272.3 202 71.8
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 4.5e-71 271.6 177 79.1
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 1.9e-69 266.2 202 71.3
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 1.0e-62 243.8 123 95.9
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 2.2e-57 226.1 176 66.5
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 2.8e-57 225.7 143 76.9
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 3.1e-56 222.2 159 70.4
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 5.3e-56 221.5 138 77.5
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 9.1e-56 220.7 183 65.0
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 1.2e-55 220.3 164 68.9
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 1.2e-55 220.3 153 71.9
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 1.2e-55 220.3 138 76.8
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 1.2e-55 220.3 152 71.1
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 1.5e-55 219.9 147 70.7
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 1.5e-55 219.9 123 82.1
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 2.0e-55 219.5 132 78.0
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 2.0e-55 219.5 175 65.7
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 2.6e-55 219.2 170 67.1
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 2.6e-55 219.2 176 66.5
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 2.6e-55 219.2 142 75.4
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.6e-55 219.2 148 73.0
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 2.6e-55 219.2 138 75.4
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 2.6e-55 219.2 118 83.9
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 3.4e-55 218.8 138 76.1
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 3.4e-55 218.8 138 76.1
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 3.4e-55 218.8 183 63.4
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 4.5e-55 218.4 121 85.1
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 5.9e-55 218.0 129 81.4
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 5.9e-55 218.0 138 76.8
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 7.7e-55 217.6 144 72.9
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 7.7e-55 217.6 132 78.0
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 7.7e-55 217.6 140 75.7
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 1.0e-54 217.2 154 69.5
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 1.3e-54 216.9 169 65.7
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 1.3e-54 216.9 132 80.3
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 1.3e-54 216.9 174 63.8
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 1.7e-54 216.5 155 69.0
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 1.7e-54 216.5 153 69.9
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 1.7e-54 216.5 132 78.8
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 2.2e-54 216.1 169 65.7
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 2.2e-54 216.1 169 65.7
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 3.8e-54 215.3 147 70.1
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 3.8e-54 215.3 181 63.0
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 5.0e-54 214.9 178 64.0
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 5.0e-54 214.9 142 75.4
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 5.0e-54 214.9 116 84.5
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 6.5e-54 214.5 125 80.8
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 8.5e-54 214.2 149 69.8
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 8.5e-54 214.2 168 64.9
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 1.1e-53 213.8 128 78.9
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 1.1e-53 213.8 178 62.9
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 1.4e-53 213.4 149 69.8
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 1.4e-53 213.4 123 83.7
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 1.4e-53 213.4 132 75.8
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 2.5e-53 212.6 118 84.7
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 4.2e-53 211.8 147 72.1
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 5.5e-53 211.5 127 78.7
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 5.5e-53 211.5 154 68.8
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 5.5e-53 211.5 164 65.9
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 7.2e-53 211.1 144 70.1
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 7.2e-53 211.1 128 79.7
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 9.4e-53 210.7 149 72.5
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.2e-52 210.3 137 73.0
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.6e-52 209.9 174 61.5
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 1.6e-52 209.9 177 62.7
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.1e-52 209.5 159 65.4
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 2.7e-52 209.1 146 72.6
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 2.7e-52 209.1 189 58.7
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 2.7e-52 209.1 187 60.4
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 4.7e-52 208.4 139 73.4
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 6.1e-52 208.0 130 76.9
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 7.9e-52 207.6 165 63.0
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 1.0e-51 207.2 142 71.1
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.4e-51 206.8 137 71.5
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 1.4e-51 206.8 130 75.4
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 1.8e-51 206.5 167 62.3
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 1.8e-51 206.5 140 70.7
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 1.8e-51 206.5 146 69.9
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 3.0e-51 205.7 144 68.1
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 5.2e-51 204.9 148 68.2
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 1.1e-50 203.8 139 69.8
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 1.5e-50 203.4 118 79.7
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 1.5e-50 203.4 177 59.3
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 3.3e-50 202.2 147 68.0
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 7.4e-50 201.1 125 78.4
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 4.8e-49 198.4 159 64.8
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 6.3e-49 198.0 140 71.4
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 1.8e-48 196.4 144 69.4
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 1.2e-47 193.7 126 67.5
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 2.0e-47 193.0 118 74.6
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 2.0e-47 193.0 137 67.2
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 4.5e-47 191.8 162 59.9
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 2.9e-46 189.1 141 66.0
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 3.8e-46 188.7 148 62.2
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 2.5e-45 186.0 198 52.0
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 4.0e-43 178.7 127 66.9
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 4.8e-41 171.8 147 61.9
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 1.4e-40 170.2 120 64.2
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 7.0e-40 167.9 141 60.3
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 2.0e-39 166.4 139 61.2
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 3.2e-37 159.1 157 56.1
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 3.6e-36 155.6 148 53.4
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 4.4e-34 148.7 116 59.5
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 2.2e-33 146.4 140 50.0
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 7.8e-23 111.3 81 66.7
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 5.0e-22 108.6 71 73.2
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.5e-21 107.1 71 71.8
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 9.5e-21 104.4 120 47.5
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 1.6e-20 103.6 64 70.3
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 8.0e-20 101.3 95 54.7
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 5.7e-18 95.1 120 41.7
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 2.3e-14 83.2 60 61.7
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 5.8e-10 68.6 68 55.9
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 6.0e-07 58.5 60 50.0


User provided reference genes

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