Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 4.0e-121 438.3 258 100.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.5e-43 180.6 204 54.9
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 2.8e-42 176.4 205 52.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.8e-42 176.4 205 52.2
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.8e-42 176.4 205 52.2
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 6.3e-42 175.3 204 52.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 2.1e-37 160.2 216 46.8
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 3.6e-37 159.5 198 48.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.6e-37 159.5 186 48.9
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.0e-35 153.7 212 44.8
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.3e-35 152.9 214 45.8
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 5.7e-35 152.1 218 44.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.4e-35 151.8 207 43.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 7.4e-35 151.8 216 44.9
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 9.7e-35 151.4 216 43.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 9.7e-35 151.4 213 46.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.7e-34 150.6 214 44.4
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.7e-34 150.6 195 45.1
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.7e-34 150.6 206 46.1
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-34 150.2 211 45.5
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 2.2e-34 150.2 213 44.6
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.7e-34 149.4 212 45.3
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 3.7e-34 149.4 214 43.9
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.8e-34 149.1 219 43.8
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 4.8e-34 149.1 218 42.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 6.3e-34 148.7 215 41.9
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 6.3e-34 148.7 216 44.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.2e-34 148.3 230 42.6
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.4e-33 147.5 212 43.4
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.4e-33 147.5 208 44.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.8e-33 147.1 210 43.3
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.8e-33 147.1 204 48.5
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.8e-33 147.1 214 43.0
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.4e-33 146.7 217 43.3
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 4.1e-33 146.0 201 46.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.1e-33 146.0 216 42.6
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 5.3e-33 145.6 211 44.5
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 6.9e-33 145.2 201 43.8
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 6.9e-33 145.2 217 42.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 9.1e-33 144.8 214 42.5
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.1e-33 144.8 229 42.8
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.2e-32 144.4 214 42.5
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.2e-32 144.4 207 45.9
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 1.2e-32 144.4 205 44.9
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.5e-32 144.1 201 43.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.0e-32 143.7 218 41.3
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.0e-32 143.7 185 46.5
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 2.0e-32 143.7 200 46.5
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.0e-32 143.7 198 44.9
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 5.9e-32 142.1 219 42.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 5.9e-32 142.1 209 42.6
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 7.7e-32 141.7 216 44.0
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.0e-31 141.4 217 42.4
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.3e-31 141.0 215 41.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.7e-31 140.6 245 39.6
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.2e-31 140.2 205 43.4
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.2e-31 140.2 213 42.3
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 3.8e-31 139.4 220 40.5
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 6.5e-31 138.7 216 41.2
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 8.5e-31 138.3 209 41.6
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 8.5e-31 138.3 171 46.8
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 8.5e-31 138.3 205 41.0
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.1e-30 137.9 216 41.2
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.1e-30 137.9 210 40.0
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.1e-30 137.9 234 41.5
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.4e-30 137.5 172 46.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.9e-30 137.1 193 44.0
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.5e-30 136.7 187 48.1
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.2e-30 136.3 239 40.2
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 3.2e-30 136.3 218 42.7
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 5.5e-30 135.6 207 40.6
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 5.5e-30 135.6 197 42.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 7.2e-30 135.2 212 38.7
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.2e-29 134.4 201 42.3
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.6e-29 134.0 215 40.0
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.6e-29 134.0 213 39.9
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.6e-29 134.0 196 42.3
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.6e-29 134.0 196 42.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.1e-29 133.7 212 41.5
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.1e-29 133.7 196 42.3
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.1e-29 133.7 216 39.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.7e-29 133.3 200 41.0
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.7e-29 132.5 200 42.5
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 4.7e-29 132.5 190 43.7
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 6.1e-29 132.1 207 40.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.0e-28 131.3 210 39.0
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.0e-28 131.3 215 42.3
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.0e-28 131.3 196 41.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-28 131.0 272 36.4
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.8e-28 130.6 196 40.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.8e-28 130.6 216 38.4
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.0e-28 129.8 197 41.1
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.9e-28 129.4 204 39.7
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 6.7e-28 128.6 213 39.0
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 6.7e-28 128.6 207 38.6
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 6.7e-28 128.6 207 38.6
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 8.8e-28 128.3 196 40.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.8e-28 128.3 196 40.8
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.0e-27 127.1 216 39.8
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 2.6e-27 126.7 194 42.3
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 1.3e-26 124.4 173 42.8
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.7e-26 124.0 210 38.6
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.7e-26 124.0 215 38.1
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 2.2e-26 123.6 118 55.1
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.8e-26 123.2 191 41.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 6.3e-26 122.1 196 40.8
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.4e-25 120.9 172 42.4
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.8e-25 120.6 167 44.9
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 4.1e-25 119.4 223 35.9
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.3e-25 119.0 234 35.5
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 9.1e-25 118.2 109 56.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.2e-24 117.9 172 41.9
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-24 117.1 130 46.9
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.6e-24 116.7 92 63.0
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 4.5e-24 115.9 160 46.2
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 4.5e-24 115.9 111 53.2
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 5.9e-24 115.5 154 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.7e-24 115.2 101 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.3e-23 114.4 125 49.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.9e-23 113.2 153 46.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-22 110.9 85 61.2
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.5e-22 110.2 92 56.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 9.4e-22 108.2 83 61.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.6e-21 106.3 91 56.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 4.7e-21 105.9 137 44.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-20 104.8 83 57.8
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.0e-20 104.8 143 42.0
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.2e-20 102.4 163 49.7
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.8e-20 101.7 92 57.6
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.0e-19 100.5 154 42.2
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 3.3e-19 99.8 160 38.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.7e-18 96.3 70 62.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.7e-16 90.1 74 55.4
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-15 88.2 74 54.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 5.0e-15 85.9 89 47.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.9e-14 84.0 66 56.1
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.5e-14 82.4 94 45.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 7.2e-14 82.0 119 40.3
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.8e-12 77.4 71 52.1
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.8e-11 71.6 148 35.8
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.8e-09 67.4 148 33.8
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.4e-09 65.9 68 48.5
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 8.5e-07 58.5 98 33.7


User provided reference genes

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