Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 5.0e-64 247.7 129 100.0
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.0e-48 196.8 123 86.2
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.1e-47 193.4 123 84.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 5.5e-39 164.5 123 74.0
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.2e-33 146.7 99 79.8
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.6e-33 146.4 99 79.8
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.5e-33 145.2 114 70.2
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.9e-33 144.4 122 63.9
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.7e-32 142.9 114 67.5
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 6.1e-30 134.4 121 65.3
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.7e-27 126.3 128 53.9
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 2.4e-26 122.5 126 56.3
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 4.1e-26 121.7 123 54.5
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 4.5e-25 118.2 103 60.2
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.3e-24 116.7 117 53.0
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 5.0e-24 114.8 99 60.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 8.6e-24 114.0 128 53.1
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 8.6e-24 114.0 114 50.9
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 2.5e-23 112.5 103 58.3
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.5e-23 112.5 118 50.8
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 3.3e-23 112.1 122 51.6
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 4.3e-23 111.7 105 58.1
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 5.6e-23 111.3 123 52.8
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 5.6e-23 111.3 104 59.6
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.1e-22 109.4 102 58.8
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.1e-22 109.4 102 58.8
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.1e-22 109.4 102 58.8
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 2.8e-22 109.0 99 57.6
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 3.6e-22 108.6 103 57.3
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.7e-22 108.2 117 49.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 6.1e-22 107.8 104 56.7
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 6.1e-22 107.8 117 48.7
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 6.1e-22 107.8 108 52.8
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 6.1e-22 107.8 108 52.8
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 6.1e-22 107.8 125 48.0
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 6.1e-22 107.8 117 55.6
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 8.0e-22 107.5 123 52.0
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 8.0e-22 107.5 103 58.3
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-22 107.5 103 58.3
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 8.0e-22 107.5 102 59.8
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.0e-21 107.1 102 57.8
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.8e-21 106.3 105 56.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 5.2e-21 104.8 137 46.7
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 5.2e-21 104.8 116 50.9
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 5.2e-21 104.8 116 50.0
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 5.2e-21 104.8 105 57.1
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 6.8e-21 104.4 100 57.0
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 6.8e-21 104.4 123 47.2
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 8.9e-21 104.0 116 50.0
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 2.0e-20 102.8 109 51.4
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.0e-20 102.8 108 51.9
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 2.0e-20 102.8 102 55.9
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.0e-20 102.8 111 49.5
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 3.4e-20 102.1 123 46.3
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 4.4e-20 101.7 113 51.3
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 4.4e-20 101.7 102 54.9
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 4.4e-20 101.7 99 57.6
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 5.7e-20 101.3 103 53.4
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 5.7e-20 101.3 125 46.4
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 7.5e-20 100.9 111 50.5
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 7.5e-20 100.9 126 45.2
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.3e-19 100.1 120 47.5
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.7e-19 98.6 124 45.2
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 3.7e-19 98.6 107 49.5
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 3.7e-19 98.6 107 49.5
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 4.9e-19 98.2 125 45.6
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 4.9e-19 98.2 115 50.4
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.1e-18 97.1 133 43.6
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.1e-18 97.1 118 47.5
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.8e-18 96.3 118 47.5
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.4e-18 95.9 117 47.0
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 2.4e-18 95.9 125 44.0
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.2e-18 95.5 105 53.3
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 4.1e-18 95.1 105 51.4
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 4.1e-18 95.1 107 52.3
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 7.0e-18 94.4 100 55.0
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 9.2e-18 94.0 122 43.4
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 9.2e-18 94.0 105 52.4
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 9.2e-18 94.0 111 49.5
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 9.2e-18 94.0 111 49.5
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 9.2e-18 94.0 101 51.5
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 9.2e-18 94.0 101 56.4
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 1.2e-17 93.6 102 55.9
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.2e-17 93.6 93 55.9
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 1.6e-17 93.2 118 46.6
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 1.6e-17 93.2 105 52.4
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.7e-17 92.4 125 43.2
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 3.5e-17 92.0 119 44.5
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 3.5e-17 92.0 103 53.4
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 7.8e-17 90.9 114 51.8
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.7e-16 89.7 98 53.1
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.7e-16 89.7 105 53.3
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.7e-16 89.7 100 50.0
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 5.0e-16 88.2 116 47.4
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 5.0e-16 88.2 116 49.1
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 5.0e-16 88.2 116 49.1
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 5.0e-16 88.2 116 49.1
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 5.0e-16 88.2 116 49.1
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 6.6e-16 87.8 112 44.6
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 8.6e-16 87.4 114 49.1
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.5e-15 86.7 118 41.5
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.9e-15 86.3 120 47.5
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 2.5e-15 85.9 100 49.0
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 3.3e-15 85.5 103 50.5
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 4.3e-15 85.1 111 49.5
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 4.3e-15 85.1 111 49.5
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 4.3e-15 85.1 111 49.5
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 4.3e-15 85.1 103 45.6
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 9.5e-15 84.0 116 46.6
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 1.6e-14 83.2 111 48.6
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.6e-14 83.2 113 46.0
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.6e-14 83.2 100 51.0
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 2.8e-14 82.4 111 48.6
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 2.8e-14 82.4 91 52.7
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.6e-14 82.0 113 44.2
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 4.7e-14 81.6 110 45.5
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 4.7e-14 81.6 107 43.0
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 8.0e-14 80.9 100 48.0
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 5.2e-13 78.2 102 50.0
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 5.2e-13 78.2 115 41.7
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.7e-11 73.2 58 62.1
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.2e-11 72.8 98 44.9
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 3.7e-11 72.0 92 42.4
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 8.3e-11 70.9 101 41.6
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.0e-09 66.2 94 41.5
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.3e-08 62.8 67 50.7


User provided reference genes

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