Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 0.0e+00 1457.6 783 100.0
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 0.0e+00 1112.8 771 80.0
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 0.0e+00 1108.6 771 79.9
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 0.0e+00 1108.2 771 79.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 0.0e+00 1089.3 771 79.2
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 0.0e+00 1081.2 771 77.8
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.9e-213 744.6 770 59.4
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 6.9e-209 731.5 770 59.5
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.9e-193 678.3 780 55.5
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.0e-172 611.3 780 52.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 4.4e-163 579.3 780 50.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.9e-158 563.9 817 49.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.3e-151 541.2 782 49.6
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-148 531.2 792 48.5
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.3e-142 509.6 803 47.3
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.3e-135 487.3 823 44.7
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 5.0e-135 486.1 807 46.0
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 3.3e-134 483.4 783 46.7
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.3e-134 483.0 583 54.5
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 6.8e-132 475.7 654 49.5
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 8.6e-127 458.8 816 45.0
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.9e-126 457.6 806 43.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.1e-125 454.1 446 61.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.5e-123 448.0 798 42.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.9e-122 443.0 777 43.6
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 6.4e-122 442.6 828 42.5
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.9e-121 441.0 802 43.1
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.1e-120 437.6 803 42.8
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-119 433.3 805 43.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-118 431.0 803 43.6
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.3e-118 429.9 809 42.9
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 7.3e-118 429.1 600 49.7
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 7.3e-118 429.1 794 44.6
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.6e-117 427.9 798 42.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 2.1e-117 427.6 795 41.6
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.2e-117 426.0 589 49.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.4e-116 424.9 766 44.9
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-116 424.5 805 42.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 2.4e-116 424.1 778 41.3
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.2e-115 421.8 796 43.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.6e-115 420.6 818 41.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 7.6e-115 419.1 820 43.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 5.4e-113 412.9 799 40.4
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 6.0e-112 409.5 799 40.2
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.8e-112 409.1 608 48.2
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.0e-111 407.1 797 42.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.6e-109 401.4 802 40.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.8e-108 397.9 815 39.4
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.1e-108 397.1 809 41.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 5.2e-108 396.4 804 40.7
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.0e-107 394.4 818 41.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-106 391.7 799 39.9
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 4.9e-106 389.8 803 40.6
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.2e-105 386.7 415 57.8
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 7.1e-105 386.0 798 39.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.2e-104 385.2 791 39.6
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.7e-104 384.0 796 40.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.0e-103 382.1 788 40.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.7e-103 381.3 703 43.7
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.3e-103 380.9 822 38.6
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.1e-102 378.6 830 39.8
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.9e-102 377.9 829 40.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.5e-102 377.5 426 55.9
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.5e-102 377.5 781 42.1
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.6e-101 373.6 838 40.0
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 9.0e-100 369.0 826 39.5
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.0e-100 369.0 803 39.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.2e-99 368.6 802 39.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.5e-99 366.7 798 38.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 8.4e-98 362.5 789 39.5
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.1e-97 362.1 887 37.2
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.4e-97 360.9 801 39.2
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 9.3e-97 359.0 804 38.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-96 358.2 802 38.9
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.7e-96 357.5 802 38.7
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-95 355.1 802 38.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.8e-95 354.8 786 39.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.3e-95 354.4 809 38.4
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.3e-95 354.4 980 33.9
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 5.1e-95 353.2 832 38.9
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 7.4e-94 349.4 451 51.2
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 7.4e-94 349.4 654 41.7
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-92 344.0 819 38.1
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 4.0e-92 343.6 787 38.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.7e-90 338.2 631 42.5
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 8.4e-90 335.9 814 36.5
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 4.2e-89 333.6 822 37.6
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 7.9e-88 329.3 800 37.6
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-87 328.9 566 42.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.3e-87 328.6 835 38.1
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.3e-87 327.8 811 37.5
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 3.9e-87 327.0 812 36.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.1e-86 325.5 477 47.6
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 9.6e-86 322.4 809 37.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.1e-85 321.2 810 36.8
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 4.8e-85 320.1 686 38.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 6.2e-85 319.7 479 47.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.4e-84 318.5 838 37.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 6.9e-84 316.2 801 36.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 2.0e-83 314.7 293 61.1
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.4e-83 313.9 834 37.1
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.9e-82 310.8 819 33.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 6.5e-82 309.7 574 41.6
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.2e-81 307.4 805 37.5
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 7.1e-81 306.2 810 36.7
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 7.1e-81 306.2 732 37.8
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 3.5e-80 303.9 539 42.9
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-79 302.4 596 40.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-79 301.2 577 41.8
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 5.1e-79 300.1 714 37.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.1e-78 298.9 603 39.5
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 9.7e-78 295.8 617 39.1
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.3e-77 295.4 723 37.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 6.3e-77 293.1 791 35.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.8e-74 283.9 641 37.6
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.1e-73 282.3 584 38.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.4e-73 282.0 650 37.8
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.6e-72 277.3 588 38.6
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.9e-71 273.9 791 33.6
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.1e-70 272.3 817 36.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 8.2e-69 266.2 557 40.0
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.1e-68 265.8 773 35.1
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.4e-68 265.4 601 37.9
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.4e-68 264.6 806 35.1
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.2e-67 262.3 700 35.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.2e-67 262.3 585 37.6
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.0e-67 261.5 553 39.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-67 261.2 556 40.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.4e-67 260.8 573 38.6
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.8e-66 257.3 707 35.2
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.0e-66 256.9 822 32.0
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 8.5e-58 229.6 643 36.2
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.2e-56 225.7 817 32.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.7e-54 216.9 736 31.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.1e-48 198.4 311 44.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.6e-48 197.6 425 37.2
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.5e-46 192.2 448 39.5
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.8e-44 185.3 417 34.8
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.0e-43 181.8 632 32.9
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-42 179.1 412 34.0
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 5.0e-42 177.2 649 31.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.5e-41 174.9 162 61.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.5e-33 149.1 384 34.4
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.5e-33 148.3 109 72.5
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 8.0e-32 143.3 556 29.3
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 4.4e-30 137.5 464 30.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 7.5e-30 136.7 100 76.0
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-26 125.9 402 30.3
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.0e-24 116.7 209 44.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 3.0e-23 114.8 130 55.4
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.8e-22 109.8 83 71.1
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.0e-18 99.8 570 28.2
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.0e-18 97.4 69 76.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-17 96.3 68 77.9
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-17 95.9 71 73.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.3e-17 94.7 71 73.2
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.6e-17 94.0 63 79.4
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.8e-16 91.7 278 33.5
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.0e-16 90.1 66 74.2
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.3e-15 88.6 164 36.6
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.9e-15 86.7 56 80.4
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-14 86.3 65 72.3
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-14 86.3 56 80.4
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-14 85.1 55 80.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.4e-14 84.7 79 58.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.5e-14 83.6 56 78.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 4.9e-13 80.9 58 69.0
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 8.3e-13 80.1 51 76.5
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-11 74.3 50 76.0
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-10 73.2 63 68.3
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.0e-10 73.2 76 53.9
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-10 72.8 50 74.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.0e-10 71.6 51 74.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 5.2e-07 60.8 50 62.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-06 58.9 39 74.4
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-06 58.5 40 72.5
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.8e-06 57.4 39 71.8
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 9.9e-06 56.6 37 75.7
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 9.9e-06 56.6 37 75.7


User provided reference genes

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