Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G565.3 Capsicum annuum HOM05D000365 ORTHO05D000154 1.9e-29 131.7 62 100.0
Solyc12g041960.2 Solanum lycopersicum HOM05D000365 ORTHO05D000154 2.0e-15 85.1 57 77.2
Sopen12g020870 Solanum pennellii HOM05D000365 ORTHO05D000154 2.0e-15 85.1 57 77.2
Sopen12g020760 Solanum pennellii HOM05D000365 ORTHO05D000154 1.3e-14 82.4 57 73.7
Solyc12g041940.1 Solanum lycopersicum HOM05D000365 ORTHO05D000154 3.0e-14 81.3 57 73.7
CAN.G637.67 Capsicum annuum HOM05D000365 ORTHO05D000154 5.0e-14 80.5 57 70.2
Nitab4.5_0006945g0050 Nicotiana tabacum HOM05D000365 ORTHO05D000154 1.5e-13 79.0 57 71.9
CAN.G616.22 Capsicum annuum HOM05D000365 ORTHO05D000154 1.9e-13 78.6 57 68.4
CAN.G758.28 Capsicum annuum HOM05D000365 ORTHO05D000154 2.5e-13 78.2 56 71.4
CAN.G758.29 Capsicum annuum HOM05D000365 ORTHO05D000154 2.5e-13 78.2 57 66.7
PGSC0003DMG400029239 Solanum tuberosum HOM05D000365 ORTHO05D000154 2.1e-12 75.1 57 70.2
Solyc03g097700.3 Solanum lycopersicum HOM05D000365 ORTHO05D000154 2.8e-12 74.7 57 68.4
Sopen03g028450 Solanum pennellii HOM05D000365 ORTHO05D000154 2.8e-12 74.7 57 68.4
CAN.G758.23 Capsicum annuum HOM05D000365 ORTHO05D000154 3.6e-12 74.3 57 66.7
CAN.G483.6 Capsicum annuum HOM05D000365 ORTHO05D000154 4.7e-12 73.9 56 67.9
CAN.G758.18 Capsicum annuum HOM05D000365 ORTHO05D000154 4.7e-12 73.9 57 64.9
Peaxi162Scf01122g00018 Petunia axillaris HOM05D000365 ORTHO05D000154 4.7e-12 73.9 57 63.2
Peaxi162Scf01122g00019 Petunia axillaris HOM05D000365 ORTHO05D000154 4.7e-12 73.9 57 63.2
PGSC0003DMG402025689 Solanum tuberosum HOM05D000365 ORTHO05D000154 6.2e-12 73.6 57 68.4
CAN.G758.24 Capsicum annuum HOM05D000365 ORTHO05D000154 8.1e-12 73.2 57 66.7
PGSC0003DMG400012023 Solanum tuberosum HOM05D000365 ORTHO05D000154 8.1e-12 73.2 57 66.7
PGSC0003DMG400012024 Solanum tuberosum HOM05D000365 ORTHO05D000154 3.1e-11 71.2 58 65.5
Nitab4.5_0001451g0060 Nicotiana tabacum HOM05D000365 ORTHO05D000154 6.8e-11 70.1 57 63.2
Sopen09g020220 Solanum pennellii HOM05D000365 ORTHO05D000154 1.2e-10 69.3 57 64.9
CAN.G637.71 Capsicum annuum HOM05D000365 ORTHO05D000154 4.4e-10 67.4 56 64.3
PGSC0003DMG401025689 Solanum tuberosum HOM05D000365 ORTHO05D000154 4.4e-10 67.4 59 61.0
CAN.G637.69 Capsicum annuum HOM05D000365 ORTHO05D001422 5.8e-10 67.0 57 59.6
Nitab4.5_0006857g0020 Nicotiana tabacum HOM05D000365 ORTHO05D000154 5.8e-10 67.0 57 59.6
Cc05_g07890 Coffea canephora HOM05D000365 ORTHO05D000154 2.9e-09 64.7 57 56.1
Cc06_g21560 Coffea canephora HOM05D000365 ORTHO05D000154 2.9e-09 64.7 57 56.1
Cc00_g28800 Coffea canephora HOM05D000365 ORTHO05D000154 3.7e-09 64.3 57 56.1
CSS0003573 Camellia sinensis var. sinensis HOM05D000365 ORTHO05D000154 1.1e-08 62.8 57 57.9
CSS0044619 Camellia sinensis var. sinensis HOM05D000365 ORTHO05D000154 1.1e-08 62.8 57 57.9
CAN.G616.19 Capsicum annuum HOM05D000365 ORTHO05D000154 1.4e-08 62.4 38 84.2
Cc00_g29110 Coffea canephora HOM05D000365 ORTHO05D000154 1.4e-08 62.4 57 56.1
Cc00_g29880 Coffea canephora HOM05D000365 ORTHO05D000154 3.2e-08 61.2 57 52.6
PGSC0003DMG400004343 Solanum tuberosum HOM05D000365 ORTHO05D000154 3.2e-08 61.2 52 65.4
Cc00_g12970 Coffea canephora HOM05D000365 ORTHO05D000154 5.4e-08 60.5 57 50.9
Cc00_g12980 Coffea canephora HOM05D000365 ORTHO05D000154 5.4e-08 60.5 57 50.9
Cc00_g25490 Coffea canephora HOM05D000365 ORTHO05D000154 5.4e-08 60.5 57 52.6
Cc00_g29100 Coffea canephora HOM05D000365 ORTHO05D000154 5.4e-08 60.5 57 54.4
Lj1A710T38 Lonicera japonica HOM05D000365 ORTHO05D000154 5.4e-08 60.5 57 52.6
MBI06_g00814_MAGBIO Magnolia biondii HOM05D000365 ORTHO05D000154 7.1e-08 60.1 57 54.4
Sabra13G0102200 Salix brachista HOM05D000365 ORTHO05D000154 7.1e-08 60.1 57 47.4
Lsat_1_v5_gn_9_107281 Lactuca sativa HOM05D000365 ORTHO05D000154 9.2e-08 59.7 57 54.4
Cc00_g16420 Coffea canephora HOM05D000365 ORTHO05D000154 1.2e-07 59.3 57 52.6
Sabra19G0106500 Salix brachista HOM05D000365 ORTHO05D000154 1.2e-07 59.3 57 50.9
Cc00_g31620 Coffea canephora HOM05D000365 ORTHO05D000154 1.6e-07 58.9 57 49.1
Dinv17306 Davidia involucrata HOM05D000365 ORTHO05D000154 1.6e-07 58.9 57 54.4
Cc00_g31130 Coffea canephora HOM05D000365 ORTHO05D000154 2.1e-07 58.5 57 49.1
Duzib106G1541 Durio zibethinus HOM05D000365 ORTHO05D000154 2.1e-07 58.5 57 56.1
Duzib106G1638 Durio zibethinus HOM05D000365 ORTHO05D000154 2.1e-07 58.5 57 56.1
Potri.019G093100 Populus trichocarpa HOM05D000365 ORTHO05D000154 2.1e-07 58.5 57 54.4
CSS0035451 Camellia sinensis var. sinensis HOM05D000365 ORTHO05D000154 2.7e-07 58.2 56 51.8
CiPaw.04G129900 Carya illinoinensis HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 56.1
HanXRQChr16g0526611 Helianthus annuus HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 52.6
Potri.013G120800 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Potri.013G121300 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Potri.013G121400 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Potri.013G121900 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Potri.013G122000 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Potri.013G122400 Populus trichocarpa HOM05D000365 ORTHO05D000154 3.5e-07 57.8 57 47.4
Dinv22991 Davidia involucrata HOM05D000365 ORTHO05D000154 4.6e-07 57.4 56 48.2
HanXRQChr16g0526781 Helianthus annuus HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 50.9
HanXRQChr17g0565221 Helianthus annuus HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 50.9
QL08p040792 Quercus lobata HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 52.6
Rhsim04G0072000 Rhododendron simsii HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 50.9
Sabra13G0102100 Salix brachista HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 47.4
TAR381G0902 Trochodendron aralioides HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 50.9
TAR381G1274 Trochodendron aralioides HOM05D000365 ORTHO05D000154 4.6e-07 57.4 57 50.9
Duzib114G0522 Durio zibethinus HOM05D000365 ORTHO05D000154 6.0e-07 57.0 57 54.4
Duzib114G0675 Durio zibethinus HOM05D000365 ORTHO05D000154 6.0e-07 57.0 57 54.4
Lsat_1_v5_gn_4_26000 Lactuca sativa HOM05D000365 ORTHO05D000154 6.0e-07 57.0 57 52.6
Actinidia39333 Actinidia chinensis HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 50.9
HanXRQChr16g0526391 Helianthus annuus HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 54.4
Phvul.008G247600 Phaseolus vulgaris HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 47.4
Phvul.008G250700 Phaseolus vulgaris HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 47.4
SHI15362 Sapria himalayana HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 47.4
Thecc.02G188400 Theobroma cacao HOM05D000365 ORTHO05D000154 7.8e-07 56.6 57 50.9
GSVIVG01020734001 Vitis vinifera HOM05D000365 ORTHO05D000154 7.8e-07 56.6 56 51.8
Dinv17308 Davidia involucrata HOM05D000365 ORTHO05D000154 1.0e-06 56.2 56 57.1
Dinv22988 Davidia involucrata HOM05D000365 ORTHO05D000154 1.0e-06 56.2 56 46.4
Dinv39836 Davidia involucrata HOM05D000365 ORTHO05D000154 1.0e-06 56.2 56 57.1
Duzib235G1385 Durio zibethinus HOM05D000365 ORTHO05D000154 1.0e-06 56.2 57 52.6
HanXRQChr16g0526811 Helianthus annuus HOM05D000365 ORTHO05D000154 1.0e-06 56.2 57 54.4
Lj1A710T37 Lonicera japonica HOM05D000365 ORTHO05D000154 1.0e-06 56.2 57 49.1
Medtr5g074610 Medicago truncatula HOM05D000365 ORTHO05D000154 1.0e-06 56.2 58 53.4
PGR042G0207 Punica granatum HOM05D000365 ORTHO05D000154 1.0e-06 56.2 57 50.9
PGR042G1324 Punica granatum HOM05D000365 ORTHO05D000154 1.0e-06 56.2 57 50.9
Actinidia30452 Actinidia chinensis HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
Cfa014673 Carpinus fangiana HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 52.6
ECA247G1499 Erigeron canadensis HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
Gohir.D10G167166 Gossypium hirsutum HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 52.6
Gohir.D10G206300 Gossypium hirsutum HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 52.6
Gorai.011G231800 Gossypium raimondii HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 52.6
Lsat_1_v5_gn_4_58741 Lactuca sativa HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
Lj1A710G32 Lonicera japonica HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
Lj1C711G1 Lonicera japonica HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
MBI06_g00808_MAGBIO Magnolia biondii HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
MBI06_g00813_MAGBIO Magnolia biondii HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 50.9
RcHm_v2.0_Chr4g0436611 Rosa chinensis HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 49.1
Sabra19G0106300 Salix brachista HOM05D000365 ORTHO05D000154 1.3e-06 55.8 57 47.4
Dinv22992 Davidia involucrata HOM05D000365 ORTHO05D000154 1.7e-06 55.5 56 48.2
Gorai.011G231500 Gossypium raimondii HOM05D000365 ORTHO05D000154 1.7e-06 55.5 57 50.9
Gorai.N012900 Gossypium raimondii HOM05D000365 ORTHO05D000154 1.7e-06 55.5 57 50.9
Lsat_1_v5_gn_4_25840 Lactuca sativa HOM05D000365 ORTHO05D000154 1.7e-06 55.5 57 50.9
Phvul.008G250600 Phaseolus vulgaris HOM05D000365 ORTHO05D000154 1.7e-06 55.5 57 47.4
Potri.013G120900 Populus trichocarpa HOM05D000365 ORTHO05D000154 1.7e-06 55.5 58 43.1
TWI38G0515 Tripterygium wilfordii HOM05D000365 ORTHO05D000154 1.7e-06 55.5 57 52.6
CANSAT64G2613 Cannabis sativa HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 50.9
Ciclev10008718m.g Citrus clementina HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 49.1
Dinv06841 Davidia involucrata HOM05D000365 ORTHO05D000154 2.3e-06 55.1 56 46.4
Gohir.A10G101110 Gossypium hirsutum HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 47.4
HanXRQChr16g0526421 Helianthus annuus HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 50.9
Prupe.3G129200 Prunus persica HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 47.4
Rhsim04G0071700 Rhododendron simsii HOM05D000365 ORTHO05D000154 2.3e-06 55.1 57 50.9
GSVIVG01020640001 Vitis vinifera HOM05D000365 ORTHO05D000154 2.3e-06 55.1 56 50.0
Aqoxy1G02252 Aquilegia oxysepala HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 49.1
CiPaw.04G129600 Carya illinoinensis HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 52.6
CiPaw.04G129700 Carya illinoinensis HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 52.6
Haze_13267 Corylus avellana HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 54.4
Dinv22990 Davidia involucrata HOM05D000365 ORTHO05D000154 3.0e-06 54.7 56 46.4
Gorai.011G231300 Gossypium raimondii HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 50.9
Gorai.N013000 Gossypium raimondii HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 50.9
HanXRQChr16g0526841 Helianthus annuus HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 50.9
HanXRQChr16g0526851 Helianthus annuus HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 50.9
Lj8C107T0 Lonicera japonica HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 52.6
Manes.13G140500 Manihot esculenta HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 45.6
Prupe.3G127600 Prunus persica HOM05D000365 ORTHO05D000154 3.0e-06 54.7 57 49.1
Glyma.14G200800 Glycine max HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 49.1
Glyma.14G200900 Glycine max HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 49.1
Glyma.14G201100 Glycine max HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 49.1
Gohir.D10G205900 Gossypium hirsutum HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 50.9
Gorai.011G230800 Gossypium raimondii HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 50.9
Gorai.011G231000 Gossypium raimondii HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 50.9
Medtr5g074540 Medicago truncatula HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 50.9
Rhsim04G0071800 Rhododendron simsii HOM05D000365 ORTHO05D000154 3.9e-06 54.3 57 50.9
CANSAT78G0415 Cannabis sativa HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 50.9
Ciclev10012033m.g Citrus clementina HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 50.9
COL.COLO4_04969 Corchorus olitorius HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Haze_13266 Corylus avellana HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 52.6
ECA247G0478 Erigeron canadensis HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Gorai.011G230900 Gossypium raimondii HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 50.9
HanXRQChr16g0526561 Helianthus annuus HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 50.9
HanXRQChr16g0526671 Helianthus annuus HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 50.9
Lj1C711G4 Lonicera japonica HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Manes.13G140497 Manihot esculenta HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 45.6
Manes.13G140900 Manihot esculenta HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Prupe.3G129400 Prunus persica HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Prupe.4G252900 Prunus persica HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 47.4
Prupe.4G253200 Prunus persica HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 47.4
Prupe.4G253300 Prunus persica HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 47.4
QL04p066142 Quercus lobata HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 47.4
GSVIVG01020638001 Vitis vinifera HOM05D000365 ORTHO05D000154 5.1e-06 53.9 57 49.1
Atru.chr6.2852 Acer truncatum HOM05D000365 ORTHO05D000154 6.6e-06 53.5 56 48.2
CANSAT78G1431 Cannabis sativa HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
CANSAT78G1759 Cannabis sativa HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
Ciclev10005275m.g Citrus clementina HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
Ciclev10005276m.g Citrus clementina HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
Ciclev10005279m.g Citrus clementina HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
Ciclev10015708m.g Citrus clementina HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 47.4
Gohir.D10G206000 Gossypium hirsutum HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 50.9
Gohir.D10G206100 Gossypium hirsutum HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 50.9
Gorai.011G186600 Gossypium raimondii HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 49.1
HanXRQChr16g0526641 Helianthus annuus HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 50.9
Manes.13G140600 Manihot esculenta HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 43.9
Oeu019774.1 Olea europaea HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 50.9
PSO717G0068 Papaver somniferum HOM05D000170 ORTHO05D000154 6.6e-06 53.5 52 42.3
Prupe.3G129000 Prunus persica HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 45.6
PGR042G2362 Punica granatum HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 47.4
Thecc.06G179200 Theobroma cacao HOM05D000365 ORTHO05D000154 6.6e-06 53.5 57 52.6
Atru.chr6.2849 Acer truncatum HOM05D000365 ORTHO05D000154 8.6e-06 53.1 56 48.2
Ciclev10006550m.g Citrus clementina HOM05D000365 ORTHO05D000154 8.6e-06 53.1 56 50.0
Migut.H02110 Erythranthe guttata HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 49.1
Glyma.14G201000 Glycine max HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 49.1
LjContig00141g0017803 Lotus japonicus HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 47.4
Prupe.3G129100 Prunus persica HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 47.4
Prupe.3G129600 Prunus persica HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 49.1
QL05p043378 Quercus lobata HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 43.9
TPR.G27350 Trifolium pratense HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 47.4
VMungo0647G2068 Vigna mungo HOM05D000365 ORTHO05D000154 8.6e-06 53.1 57 45.6


User provided reference genes

Program Settings