Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G551.121 Capsicum annuum HOM05D000240 ORTHO05D016672 1.3e-38 162.5 77 100.0
Peaxi162Scf00474g00522 Petunia axillaris HOM05D000240 ORTHO05D002721 1.2e-25 119.4 65 86.2
PGSC0003DMG400013573 Solanum tuberosum HOM05D000240 ORTHO05D002721 5.7e-23 110.5 66 83.3
Solyc07g042560.4 Solanum lycopersicum HOM05D000240 ORTHO05D002721 1.6e-22 109.0 66 81.8
Sopen07g022250 Solanum pennellii HOM05D000240 ORTHO05D002721 6.3e-22 107.1 66 78.8
CAN.G54.12 Capsicum annuum HOM05D000240 ORTHO05D002721 4.1e-21 104.4 66 74.2
Cc06_g12690 Coffea canephora HOM05D000240 ORTHO05D002721 2.6e-20 101.7 74 66.2
Nitab4.5_0000170g0040 Nicotiana tabacum HOM05D000240 ORTHO05D002721 4.5e-20 100.9 72 72.2
Nitab4.5_0003139g0100 Nicotiana tabacum HOM05D000240 ORTHO05D002721 4.5e-20 100.9 72 72.2
Dinv25507 Davidia involucrata HOM05D000240 ORTHO05D002721 1.6e-17 92.4 69 68.1
vmacro17079 Vaccinium macrocarpon HOM05D000240 ORTHO05D002721 3.3e-15 84.7 69 62.3
Migut.L01595 Erythranthe guttata HOM05D000240 ORTHO05D002721 4.3e-15 84.3 57 68.4
SGA_v2.0_scaffold21G09557 Striga asiatica HOM05D000240 ORTHO05D002721 5.7e-15 84.0 57 68.4
Gohir.D13G196100 Gossypium hirsutum HOM05D000240 ORTHO05D002721 7.4e-15 83.6 70 58.6
Gorai.013G222300 Gossypium raimondii HOM05D000240 ORTHO05D002721 7.4e-15 83.6 70 58.6
Actinidia39618 Actinidia chinensis HOM05D000240 ORTHO05D002721 9.7e-15 83.2 72 59.7
CSS0050230 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002721 9.7e-15 83.2 57 70.2
Rhsim05G0002200 Rhododendron simsii HOM05D000240 ORTHO05D002721 9.7e-15 83.2 66 63.6
Gohir.A13G189100 Gossypium hirsutum HOM05D000240 ORTHO05D002721 1.6e-14 82.4 70 57.1
CiPaw.03G200500 Carya illinoinensis HOM05D000240 ORTHO05D002721 3.7e-14 81.3 72 58.3
Lj4C920T7 Lonicera japonica HOM05D000240 ORTHO05D002721 4.8e-14 80.9 57 71.9
MSTRG.26499 Avicennia marina HOM05D000240 ORTHO05D002721 8.2e-14 80.1 55 69.1
Manes.03G044500 Manihot esculenta HOM05D000240 ORTHO05D002721 1.4e-13 79.3 69 56.5
Potri.006G136600 Populus trichocarpa HOM05D000240 ORTHO05D002721 1.4e-13 79.3 55 65.5
Sabra06G0106800 Salix brachista HOM05D000240 ORTHO05D002721 1.4e-13 79.3 55 65.5
Sabra06G0125600 Salix brachista HOM05D000240 ORTHO05D016672 1.4e-13 79.3 55 65.5
ClCG11G000120 Citrullus lanatus HOM05D000240 ORTHO05D002721 2.4e-13 78.6 69 55.1
unitig_578.g15875 Utricularia gibba HOM05D000240 ORTHO05D002721 3.1e-13 78.2 57 61.4
SalBow5G3088 Salvia bowleyana HOM05D000240 ORTHO05D002721 5.3e-13 77.4 61 59.0
SalBow5G3607 Salvia bowleyana HOM05D000240 ORTHO05D002721 5.3e-13 77.4 61 59.0
DCAR_028529 Daucus carota HOM05D000240 ORTHO05D002721 6.9e-13 77.0 63 57.1
Lsat_1_v5_gn_7_35460 Lactuca sativa HOM05D000240 ORTHO05D002721 9.1e-13 76.6 57 63.2
EL10Ac8g18967 Beta vulgaris HOM05D000240 ORTHO05D002721 2.0e-12 75.5 57 64.9
Hund08899 Selenicereus undatus HOM05D000240 ORTHO05D016672 3.4e-12 74.7 57 63.2
CsaV3_5G027690 Cucumis sativus L. HOM05D000240 ORTHO05D002721 5.9e-12 73.9 55 61.8
Cfa002938 Carpinus fangiana HOM05D000240 ORTHO05D002721 7.7e-12 73.6 69 59.4
Haze_26068 Corylus avellana HOM05D000240 ORTHO05D002721 1.0e-11 73.2 69 59.4
unitig_8.g3242 Utricularia gibba HOM05D000240 ORTHO05D002721 1.3e-11 72.8 57 54.4
Atru.chr7.1766 Acer truncatum HOM05D000240 ORTHO05D002721 1.7e-11 72.4 55 63.6
MELO3C022897.2 Cucumis melo HOM05D000240 ORTHO05D002721 1.7e-11 72.4 69 53.6
GSVIVG01015015001 Vitis vinifera HOM05D000240 ORTHO05D002721 2.2e-11 72.0 69 56.5
Lalb_Chr07g0181401 Lupinus albus HOM05D000240 ORTHO05D002721 2.9e-11 71.6 70 51.4
AUR62025320 Chenopodium quinoa HOM05D000240 ORTHO05D002721 5.0e-11 70.9 56 62.5
MD15G1223600 Malus domestica HOM05D000240 ORTHO05D002721 5.0e-11 70.9 66 56.1
Ciclev10007377m.g Citrus clementina HOM05D000240 ORTHO05D002721 6.5e-11 70.5 69 52.2
Sc18g0002840 Simmondsia chinensis HOM05D000240 ORTHO05D002721 6.5e-11 70.5 53 62.3
TWI63G0011 Tripterygium wilfordii HOM05D000240 ORTHO05D002721 8.5e-11 70.1 55 63.6
Phvul.003G127400 Phaseolus vulgaris HOM05D000240 ORTHO05D002721 1.4e-10 69.3 54 64.8
QL11p002948 Quercus lobata HOM05D000240 ORTHO05D002721 1.4e-10 69.3 57 63.2
FvH4_1g09380 Fragaria vesca HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN19G2505 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN23G2089 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN26G1305 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN26G3278 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN28G1500 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
FAN28G2664 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.9e-10 68.9 52 59.6
RcHm_v2.0_Chr2g0095931 Rosa chinensis HOM05D000240 ORTHO05D002721 1.9e-10 68.9 61 52.5
AUR62028320 Chenopodium quinoa HOM05D000240 ORTHO05D002721 2.5e-10 68.6 56 60.7
PSO135G0073 Papaver somniferum HOM05D000240 ORTHO05D002721 2.5e-10 68.6 68 50.0
Ah.09g228930 Amaranthus hybridus HOM05D000240 ORTHO05D002721 3.2e-10 68.2 57 59.6
COL.COLO4_21209 Corchorus olitorius HOM05D000240 ORTHO05D002721 3.2e-10 68.2 70 51.4
PSO724G0820 Papaver somniferum HOM05D000240 ORTHO05D002721 3.2e-10 68.2 71 47.9
TPR.G30026 Trifolium pratense HOM05D000240 ORTHO05D016672 3.2e-10 68.2 70 52.9
Duzib168G0831 Durio zibethinus HOM05D000240 ORTHO05D002721 4.2e-10 67.8 55 58.2
A06p26610 Brassica napus HOM05D000240 ORTHO05D002721 5.5e-10 67.4 65 53.8
BraA06t25589Z Brassica rapa HOM05D000240 ORTHO05D002721 5.5e-10 67.4 65 53.8
Glyma.13G114200 Glycine max HOM05D000240 ORTHO05D002721 5.5e-10 67.4 53 64.2
arahy.Tifrunner.gnm1.ann1.Q5X08K Arachis hypogaea HOM05D000240 ORTHO05D002721 9.4e-10 66.6 48 60.4
Prupe.7G192200 Prunus persica HOM05D000240 ORTHO05D002721 1.2e-09 66.2 51 62.7
Aa31LG7G3060 Aethionema arabicum HOM05D000240 ORTHO05D002721 1.6e-09 65.9 57 56.1
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.1e-09 65.5 48 64.6
Medtr4g124650 Medicago truncatula HOM05D000240 ORTHO05D002721 2.1e-09 65.5 74 48.6
Nn8g38535 Nelumbo nucifera HOM05D000240 ORTHO05D002721 2.7e-09 65.1 66 53.0
BcaC01g02203 Brassica carinata HOM05D000240 ORTHO05D002721 4.6e-09 64.3 70 48.6
Lj4g0024891 Lotus japonicus HOM05D000240 ORTHO05D002721 4.6e-09 64.3 49 63.3
Carub.0005s0903 Capsella rubella HOM05D000240 ORTHO05D002721 6.1e-09 63.9 47 63.8
Lalb_Chr24g0397921 Lupinus albus HOM05D000240 ORTHO05D002721 6.1e-09 63.9 68 48.5
THA.LOC104813906 Tarenaya hassleriana HOM05D000240 ORTHO05D002721 6.1e-09 63.9 57 49.1
CANSAT56G3375 Cannabis sativa HOM05D000240 ORTHO05D002721 7.9e-09 63.5 70 50.0
Thhalv10002392m.g Eutrema salsugineum HOM05D000240 ORTHO05D002721 7.9e-09 63.5 53 60.4
Sc12g0007540 Simmondsia chinensis HOM05D000240 ORTHO05D002721 7.9e-09 63.5 55 54.5
VMungo1215G0352 Vigna mungo HOM05D000240 ORTHO05D002721 7.9e-09 63.5 53 60.4
MSTRG.4518 Avicennia marina HOM05D000240 ORTHO05D002721 1.0e-08 63.2 68 45.6
BcaB02g10782 Brassica carinata HOM05D000240 ORTHO05D002721 1.0e-08 63.2 65 53.8
Ciclev10018724m.g Citrus clementina HOM05D000240 ORTHO05D002721 1.0e-08 63.2 60 53.3
Thecc.09G070400 Theobroma cacao HOM05D000240 ORTHO05D002721 1.0e-08 63.2 70 51.4
TAR383G0768 Trochodendron aralioides HOM05D000240 ORTHO05D002721 1.0e-08 63.2 69 50.7
Atru.chr9.898 Acer truncatum HOM05D000240 ORTHO05D002721 1.4e-08 62.8 57 54.4
A06p14380 Brassica napus HOM05D000240 ORTHO05D002721 1.4e-08 62.8 55 52.7
BraA06t24566Z Brassica rapa HOM05D000240 ORTHO05D002721 1.4e-08 62.8 55 52.7
THA.LOC104810981 Tarenaya hassleriana HOM05D000240 ORTHO05D002721 1.4e-08 62.8 49 57.1
HPP92_003281 Vanilla planifolia HOM05D000240 ORTHO05D002721 1.4e-08 62.8 55 49.1
HPP92_003288 Vanilla planifolia HOM05D000240 ORTHO05D002721 1.4e-08 62.8 55 49.1
EL10Ac3g06875 Beta vulgaris HOM05D000240 ORTHO05D002721 1.8e-08 62.4 66 48.5
C03p67900 Brassica napus HOM05D000240 ORTHO05D002721 1.8e-08 62.4 65 52.3
BolSC21t60223H Brassica oleracea HOM05D000240 ORTHO05D002721 1.8e-08 62.4 65 52.3
ECA240G2954 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.8e-08 62.4 40 70.0
Eucgr.C03198 Eucalyptus grandis HOM05D000240 ORTHO05D002721 1.8e-08 62.4 57 54.4
SGA_v2.0_scaffold42G16023 Striga asiatica HOM05D000240 ORTHO05D002721 1.8e-08 62.4 68 47.1
AL5G21280 Arabidopsis lyrata HOM05D000240 ORTHO05D002721 2.3e-08 62.0 47 61.7
BcaB07g31846 Brassica carinata HOM05D000240 ORTHO05D002721 2.3e-08 62.0 50 56.0
THA.LOC104812150 Tarenaya hassleriana HOM05D000240 ORTHO05D002721 2.3e-08 62.0 57 50.9
CsaV3_1G006890 Cucumis sativus L. HOM05D000240 ORTHO05D002721 3.0e-08 61.6 68 45.6
GSVIVG01008333001 Vitis vinifera HOM05D000240 ORTHO05D002721 3.0e-08 61.6 63 50.8
Actinidia35097 Actinidia chinensis HOM05D000240 ORTHO05D002721 3.9e-08 61.2 55 54.5
Cpa.g.sc3.468 Carica papaya HOM05D000240 ORTHO05D002721 3.9e-08 61.2 63 49.2
DCAR_011365 Daucus carota HOM05D000240 ORTHO05D002721 3.9e-08 61.2 55 54.5
MD02G1106600 Malus domestica HOM05D000240 ORTHO05D016672 6.7e-08 60.5 56 50.0
Potri.012G054400 Populus trichocarpa HOM05D000240 ORTHO05D002721 6.7e-08 60.5 50 60.0
Sp5g18550 Schrenkiella parvula HOM05D000240 ORTHO05D002721 6.7e-08 60.5 61 45.9
TAR622G1064 Trochodendron aralioides HOM05D000240 ORTHO05D002721 6.7e-08 60.5 55 52.7
Aa31LG4G12990 Aethionema arabicum HOM05D000240 ORTHO05D002721 8.8e-08 60.1 49 57.1
AL1G30790 Arabidopsis lyrata HOM05D000240 ORTHO05D002721 8.8e-08 60.1 55 50.9
CDE08G0508 Ceratophyllum demersum HOM05D000240 ORTHO05D002721 8.8e-08 60.1 66 51.5
Lj2g0024066 Lotus japonicus HOM05D000240 ORTHO05D002721 1.1e-07 59.7 63 50.8
Sp1g16330 Schrenkiella parvula HOM05D000240 ORTHO05D002721 1.1e-07 59.7 55 50.9
SEGI_21475 Sequoiadendron giganteum HOM05D000240 ORTHO05D002721 1.1e-07 59.7 73 47.9
CARHR018970 Cardamine hirsuta HOM05D000240 ORTHO05D002721 1.5e-07 59.3 63 46.0
MELO3C002106.2 Cucumis melo HOM05D000240 ORTHO05D002721 1.5e-07 59.3 63 47.6
TAR622G0068 Trochodendron aralioides HOM05D000240 ORTHO05D002721 1.5e-07 59.3 55 50.9
Thhalv10006702m.g Eutrema salsugineum HOM05D000240 ORTHO05D002721 2.0e-07 58.9 50 54.0
Rhsim08G0130900 Rhododendron simsii HOM05D000240 ORTHO05D002721 2.0e-07 58.9 55 52.7
BcaC05g25729 Brassica carinata HOM05D000240 ORTHO05D002721 2.6e-07 58.5 51 52.9
BolC5t30361H Brassica oleracea HOM05D000240 ORTHO05D002721 2.6e-07 58.5 51 52.9
Hma1.2p1_0653F.1_g196050 Hydrangea macrophylla HOM05D000240 ORTHO05D002721 2.6e-07 58.5 50 56.0
Hma1.2p1_1283F.1_g272740 Hydrangea macrophylla HOM05D000240 ORTHO05D002721 2.6e-07 58.5 50 56.0
Nn4g23942 Nelumbo nucifera HOM05D000240 ORTHO05D002721 2.6e-07 58.5 55 50.9
Potri.015G044600 Populus trichocarpa HOM05D000240 ORTHO05D002721 2.6e-07 58.5 55 52.7
Sabra15G0040500 Salix brachista HOM05D000240 ORTHO05D002721 2.6e-07 58.5 55 52.7
Sed0022139 Sechium edule HOM05D000240 ORTHO05D002721 2.6e-07 58.5 55 50.9
AT3G43210 Arabidopsis thaliana HOM05D000240 ORTHO05D002721 4.4e-07 57.8 43 58.1
arahy.Tifrunner.gnm1.ann1.K6T9FH Arachis hypogaea HOM05D000240 ORTHO05D002721 4.4e-07 57.8 55 54.5
arahy.Tifrunner.gnm1.ann1.XRS16L Arachis hypogaea HOM05D000240 ORTHO05D002721 4.4e-07 57.8 55 54.5
CSS0004151 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002721 4.4e-07 57.8 55 50.9
HanXRQChr17g0560691 Helianthus annuus HOM05D000240 ORTHO05D002721 4.4e-07 57.8 55 49.1
Migut.E01768 Erythranthe guttata HOM05D000240 ORTHO05D002721 5.7e-07 57.4 68 41.2
Manes.05G132500 Manihot esculenta HOM05D000240 ORTHO05D002721 5.7e-07 57.4 68 47.1
Psat1g035240 Pisum sativum HOM05D000240 ORTHO05D002721 5.7e-07 57.4 55 50.9
TPR.G29484 Trifolium pratense HOM05D000240 ORTHO05D002721 5.7e-07 57.4 55 50.9
Zm00001eb379030 Zea mays HOM05D000240 ORTHO05D002721 5.7e-07 57.4 50 54.0
Carub.0001s1800 Capsella rubella HOM05D000240 ORTHO05D002721 7.4e-07 57.0 55 49.1
HanXRQChr01g0007541 Helianthus annuus HOM05D000240 ORTHO05D002721 7.4e-07 57.0 58 50.0
Nn3g17939 Nelumbo nucifera HOM05D000240 ORTHO05D002721 7.4e-07 57.0 63 47.6
TAR371G0097 Trochodendron aralioides HOM05D000240 ORTHO05D002721 7.4e-07 57.0 63 46.0
C05p16620 Brassica napus HOM05D000240 ORTHO05D002721 9.7e-07 56.6 51 52.9
ClCG04G010950 Citrullus lanatus HOM05D000240 ORTHO05D002721 9.7e-07 56.6 63 46.0
PSO063G7398 Papaver somniferum HOM05D000240 ORTHO05D002721 9.7e-07 56.6 55 45.5
Sed0008050 Sechium edule HOM05D000240 ORTHO05D002721 9.7e-07 56.6 61 47.5
AT1G18370 Arabidopsis thaliana HOM05D000240 ORTHO05D002721 1.3e-06 56.2 55 45.5
CiPaw.16G088600 Carya illinoinensis HOM05D000240 ORTHO05D002721 1.3e-06 56.2 63 47.6
ECA233G3901 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.3e-06 56.2 55 47.3
BcaC07g41333 Brassica carinata HOM05D000240 ORTHO05D002721 1.7e-06 55.8 50 52.0
Lalb_Chr14g0370981 Lupinus albus HOM05D000240 ORTHO05D002721 1.7e-06 55.8 55 49.1
MBI16_g41994_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016672 1.7e-06 55.8 62 51.6
PGR044G2431 Punica granatum HOM05D000240 ORTHO05D002721 1.7e-06 55.8 53 54.7
arahy.Tifrunner.gnm1.ann1.02FBPF Arachis hypogaea HOM05D000240 ORTHO05D016672 2.2e-06 55.5 55 52.7
Dinv01102 Davidia involucrata HOM05D000240 ORTHO05D002721 2.2e-06 55.5 50 52.0
Dinv12219 Davidia involucrata HOM05D000240 ORTHO05D002721 2.2e-06 55.5 50 52.0
PSO782G5060 Papaver somniferum HOM05D000240 ORTHO05D002721 2.2e-06 55.5 50 48.0
Hund10293 Selenicereus undatus HOM05D000240 ORTHO05D002721 2.2e-06 55.5 43 55.8
Lj5A152G72 Lonicera japonica HOM05D000240 ORTHO05D002721 2.8e-06 55.1 50 52.0
Glyma.07G096500 Glycine max HOM05D000240 ORTHO05D002721 3.7e-06 54.7 55 49.1
Aqoxy7G04153 Aquilegia oxysepala HOM05D000240 ORTHO05D002721 4.8e-06 54.3 65 46.2
Os01g0513900 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002721 4.8e-06 54.3 46 52.2
CANSAT80G1867 Cannabis sativa HOM05D000240 ORTHO05D002721 6.3e-06 53.9 49 53.1
MBI19_g36232_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002721 6.3e-06 53.9 61 49.2
Oeu017510.1 Olea europaea HOM05D000240 ORTHO05D002721 6.3e-06 53.9 50 52.0
RcHm_v2.0_Chr7g0186051 Rosa chinensis HOM05D000240 ORTHO05D002721 6.3e-06 53.9 43 53.5
TAR374G0907 Trochodendron aralioides HOM05D000240 ORTHO05D002721 6.3e-06 53.9 49 51.0
CAN.G1129.9 Capsicum annuum HOM05D000240 ORTHO05D002721 8.2e-06 53.5 68 41.2
Psat4g019760 Pisum sativum HOM05D000240 ORTHO05D002721 8.2e-06 53.5 69 44.9


User provided reference genes

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