Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G546.46 Capsicum annuum HOM05D000045 ORTHO05D015028 3.7e-60 234.6 111 100.0
CAN.G65.213 Capsicum annuum HOM05D000045 ORTHO05D000067 2.1e-18 95.9 60 81.7
Solyc06g073670.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 7.9e-18 94.0 60 80.0
Sopen06g030080 Solanum pennellii HOM05D000045 ORTHO05D000067 7.9e-18 94.0 60 80.0
Nitab4.5_0002184g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 5.1e-17 91.3 60 75.0
Nitab4.5_0000271g0200 Nicotiana tabacum HOM05D000045 ORTHO05D000067 1.1e-16 90.1 60 75.0
CiPaw.14G091900 Carya illinoinensis HOM05D000045 ORTHO05D000067 5.3e-14 81.3 53 69.8
Peaxi162Scf00526g00068 Petunia axillaris HOM05D000045 ORTHO05D000067 5.3e-14 81.3 60 70.0
QL01p020366 Quercus lobata HOM05D000045 ORTHO05D000067 9.0e-14 80.5 53 69.8
Haze_23661 Corylus avellana HOM05D000045 ORTHO05D000067 5.9e-13 77.8 53 66.0
Cpa.g.sc103.69 Carica papaya HOM05D004830 ORTHO05D000067 7.6e-13 77.4 55 63.6
Hma1.2p1_0218F.1_g092600 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 2.2e-12 75.9 53 64.2
Thecc.09G337000 Theobroma cacao HOM05D000045 ORTHO05D000067 2.2e-12 75.9 56 64.3
Dinv05235 Davidia involucrata HOM05D000045 ORTHO05D000067 3.8e-12 75.1 60 61.7
Dinv32075 Davidia involucrata HOM05D000045 ORTHO05D000067 5.0e-12 74.7 60 61.7
Prupe.5G010000 Prunus persica HOM05D000045 ORTHO05D000067 5.0e-12 74.7 51 66.7
Atru.chr3.3011 Acer truncatum HOM05D000045 ORTHO05D000067 6.5e-12 74.3 53 64.2
Actinidia37189 Actinidia chinensis HOM05D004830 ORTHO05D005310 1.4e-11 73.2 55 65.5
A03p26760 Brassica napus HOM05D000045 ORTHO05D000067 1.4e-11 73.2 54 63.0
BraA03t11887Z Brassica rapa HOM05D000045 ORTHO05D000067 1.4e-11 73.2 54 63.0
Rhsim13G0200800 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.9e-11 72.8 60 61.7
GSVIVG01037455001 Vitis vinifera HOM05D000045 ORTHO05D000067 2.5e-11 72.4 53 62.3
COL.COLO4_18372 Corchorus olitorius HOM05D000045 ORTHO05D000067 3.2e-11 72.0 56 60.7
Gohir.D08G213300 Gossypium hirsutum HOM05D000045 ORTHO05D000067 5.5e-11 71.2 64 53.1
Gorai.004G227400 Gossypium raimondii HOM05D000045 ORTHO05D000067 5.5e-11 71.2 64 53.1
Manes.11G111500 Manihot esculenta HOM05D000045 ORTHO05D000067 5.5e-11 71.2 53 62.3
CSS0018867 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.2e-11 70.9 58 60.3
CSS0049479 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.2e-11 70.9 58 60.3
Lj6g0022384 Lotus japonicus HOM05D000045 ORTHO05D000067 7.2e-11 70.9 47 66.0
Gohir.A08G196200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 9.4e-11 70.5 64 53.1
Lalb_Chr10g0105861 Lupinus albus HOM05D000045 ORTHO05D000067 9.4e-11 70.5 49 63.3
RcHm_v2.0_Chr1g0335301 Rosa chinensis HOM05D000045 ORTHO05D000067 9.4e-11 70.5 58 60.3
Duzib170G0988 Durio zibethinus HOM05D000045 ORTHO05D000067 1.2e-10 70.1 64 51.6
Gohir.A03G035200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.6e-10 69.7 52 57.7
FvH4_7g06621 Fragaria vesca HOM05D000045 ORTHO05D000067 2.1e-10 69.3 58 58.6
vmacro04111 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 2.1e-10 69.3 60 58.3
Gohir.D03G133000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.7e-10 68.9 64 50.0
MD16G1283900 Malus domestica HOM05D000045 ORTHO05D000067 2.7e-10 68.9 51 60.8
CAN.G102.7 Capsicum annuum HOM05D000045 ORTHO05D015028 3.6e-10 68.6 37 86.5
Ciclev10018084m.g Citrus clementina HOM05D000045 ORTHO05D000067 3.6e-10 68.6 53 58.5
Psat0s1748g0080 Pisum sativum HOM05D000045 ORTHO05D000067 3.6e-10 68.6 48 60.4
Potri.009G158400 Populus trichocarpa HOM05D000045 ORTHO05D000067 3.6e-10 68.6 53 58.5
C03p32060 Brassica napus HOM05D000045 ORTHO05D000067 4.6e-10 68.2 53 60.4
Nn7g37292 Nelumbo nucifera HOM05D000045 ORTHO05D000067 4.6e-10 68.2 47 63.8
TWI31G1093 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.6e-10 68.2 54 55.6
MELO3C015625.2 Cucumis melo HOM05D000045 ORTHO05D000067 6.1e-10 67.8 54 53.7
CsaV3_1G042070 Cucumis sativus L. HOM05D000045 ORTHO05D000067 6.1e-10 67.8 54 53.7
Duzib168G0153 Durio zibethinus HOM05D000045 ORTHO05D000067 6.1e-10 67.8 56 58.9
Gorai.003G140100 Gossypium raimondii HOM05D000045 ORTHO05D000067 6.1e-10 67.8 56 57.1
MD06G1010400 Malus domestica HOM05D000045 ORTHO05D000067 6.1e-10 67.8 51 58.8
Potri.004G196300 Populus trichocarpa HOM05D000045 ORTHO05D000067 6.1e-10 67.8 53 58.5
PGR119G0427 Punica granatum HOM05D000045 ORTHO05D000067 6.1e-10 67.8 50 60.0
AT2G27110 Arabidopsis thaliana HOM05D000045 ORTHO05D000067 7.9e-10 67.4 53 58.5
ClCG03G014180 Citrullus lanatus HOM05D000045 ORTHO05D000067 7.9e-10 67.4 54 53.7
Phvul.L004237 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 7.9e-10 67.4 60 55.0
Sed0013380 Sechium edule HOM05D000045 ORTHO05D000067 7.9e-10 67.4 54 53.7
BolC3t15550H Brassica oleracea HOM05D000045 ORTHO05D000067 1.0e-09 67.0 53 58.5
Carub.0004s0760 Capsella rubella HOM05D000045 ORTHO05D000067 1.0e-09 67.0 53 58.5
Ca_16238_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 1.0e-09 67.0 46 63.0
Thhalv10001905m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 1.0e-09 67.0 53 58.5
Lsat_1_v5_gn_3_115961 Lactuca sativa HOM05D000045 ORTHO05D000067 1.0e-09 67.0 54 63.0
AL4G20800 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 2.3e-09 65.9 53 56.6
CARHR119430 Cardamine hirsuta HOM05D000045 ORTHO05D000067 2.3e-09 65.9 53 58.5
Glyma.20G053500 Glycine max HOM05D000045 ORTHO05D000067 2.3e-09 65.9 53 56.6
Sabra09G0124000 Salix brachista HOM05D000045 ORTHO05D000067 2.3e-09 65.9 53 56.6
THA.LOC104800493 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 3.9e-09 65.1 53 56.6
TAR633G1657 Trochodendron aralioides HOM05D004830 ORTHO05D005310 5.1e-09 64.7 53 60.4
CANSAT54G2310 Cannabis sativa HOM05D000045 ORTHO05D000067 6.7e-09 64.3 53 54.7
Sp4g09780 Schrenkiella parvula HOM05D000045 ORTHO05D000067 6.7e-09 64.3 50 60.0
SpUn0012_0050 Schrenkiella parvula HOM05D000045 ORTHO05D000067 6.7e-09 64.3 50 60.0
TPR.G19401 Trifolium pratense HOM05D000045 ORTHO05D000067 8.8e-09 63.9 45 62.2
Aqoxy4G00834 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 1.5e-08 63.2 47 66.0
RcHm_v2.0_Chr1g0338891 Rosa chinensis HOM05D004830 ORTHO05D005310 1.9e-08 62.8 38 71.1
Sc12g0000520 Simmondsia chinensis HOM05D000045 ORTHO05D000067 3.3e-08 62.0 60 51.7
Solyc07g008150.3 Solanum lycopersicum HOM05D000020 ORTHO05D000543 5.7e-08 61.2 56 55.4
Sopen07g004020 Solanum pennellii HOM05D000020 ORTHO05D000543 5.7e-08 61.2 56 55.4
PGSC0003DMG402030921 Solanum tuberosum HOM05D000020 ORTHO05D000543 5.7e-08 61.2 56 55.4
EL10Ac7g16221 Beta vulgaris HOM05D000045 ORTHO05D000067 9.7e-08 60.5 51 58.8
CAN.G1093.1 Capsicum annuum HOM05D000020 ORTHO05D000543 9.7e-08 60.5 27 100.0
Psat2g053400 Pisum sativum HOM05D000188 ORTHO05D015028 9.7e-08 60.5 45 53.3
HanXRQChr03g0091681 Helianthus annuus HOM05D000045 ORTHO05D000067 1.3e-07 60.1 58 56.9
PSO339G0029 Papaver somniferum HOM05D000045 ORTHO05D000067 1.3e-07 60.1 52 53.8
PSO384G0901 Papaver somniferum HOM05D000045 ORTHO05D000067 1.3e-07 60.1 52 53.8
Phvul.008G208300 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 1.7e-07 59.7 57 50.9
Psat5g029520 Pisum sativum HOM05D000188 ORTHO05D015028 2.2e-07 59.3 45 51.1
ECA240G1554 Erigeron canadensis HOM05D000045 ORTHO05D000067 2.8e-07 58.9 53 56.6
Aa31LG5G8500 Aethionema arabicum HOM05D000045 ORTHO05D000067 4.8e-07 58.2 53 52.8
Glyma.14G043900 Glycine max HOM05D000045 ORTHO05D000067 8.2e-07 57.4 64 43.8
arahy.Tifrunner.gnm1.ann1.F6YBSJ Arachis hypogaea HOM05D004830 ORTHO05D005310 4.1e-06 55.1 58 51.7
arahy.Tifrunner.gnm1.ann1.W6VT7I Arachis hypogaea HOM05D004830 ORTHO05D005310 4.1e-06 55.1 58 51.7
Oeu031005.1 Olea europaea HOM05D000020 ORTHO05D000543 5.3e-06 54.7 27 88.9
Glyma.02G273500 Glycine max HOM05D000045 ORTHO05D000067 6.9e-06 54.3 57 47.4
Oeu012609.1 Olea europaea HOM05D000020 ORTHO05D000543 9.1e-06 53.9 47 53.2


User provided reference genes

Program Settings