Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G546.3 Capsicum annuum HOM05D008706 ORTHO05D010440 8.4e-230 800.0 415 100.0
Sopen12g023140 Solanum pennellii HOM05D008706 ORTHO05D010440 1.0e-142 510.8 419 62.8
CAN.G546.5 Capsicum annuum HOM05D008706 ORTHO05D010440 1.1e-141 507.3 352 72.2
Sopen12g023130 Solanum pennellii HOM05D008706 ORTHO05D010440 2.8e-140 502.7 419 62.3
Solyc12g044775.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 2.3e-139 499.6 408 62.3
Solyc12g044790.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 3.4e-138 495.7 419 60.6
PGSC0003DMG400008116 Solanum tuberosum HOM05D008706 ORTHO05D010440 1.7e-137 493.4 407 61.4
Sopen12g023120 Solanum pennellii HOM05D008706 ORTHO05D010440 1.2e-132 477.2 387 62.5
PGSC0003DMG400008068 Solanum tuberosum HOM05D008706 ORTHO05D010440 8.0e-132 474.6 418 61.5
Solyc12g044780.2 Solanum lycopersicum HOM05D008706 ORTHO05D010440 2.1e-119 433.3 361 60.4
Solyc11g069120.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 4.3e-93 345.9 333 55.3
Nitab4.5_0001201g0040 Nicotiana tabacum HOM05D008706 ORTHO05D010440 8.1e-92 341.7 425 47.1
Peaxi162Scf00347g00087 Petunia axillaris HOM05D008706 ORTHO05D010440 4.9e-89 332.4 426 45.8
PGSC0003DMG400024780 Solanum tuberosum HOM05D008706 ORTHO05D010440 6.7e-86 322.0 417 48.2
Peaxi162Scf00073g00111 Petunia axillaris HOM05D008706 ORTHO05D010440 5.3e-83 312.4 377 49.3
Sopen01g043690 Solanum pennellii HOM05D008706 ORTHO05D010440 1.0e-81 308.1 419 46.3
Sopen01g043720 Solanum pennellii HOM05D008706 ORTHO05D010440 1.0e-81 308.1 419 46.3
Nitab4.5_0008157g0050 Nicotiana tabacum HOM05D008706 ORTHO05D010440 1.5e-74 284.3 307 52.4
Nitab4.5_0001201g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 1.0e-73 281.6 422 41.5
Nitab4.5_0002715g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 2.1e-71 273.9 419 44.4
Nitab4.5_0002715g0100 Nicotiana tabacum HOM05D008706 ORTHO05D010440 4.3e-69 266.2 352 45.2
PGSC0003DMG400037185 Solanum tuberosum HOM05D008706 ORTHO05D010440 6.3e-68 262.3 419 40.1
PGSC0003DMG400037851 Solanum tuberosum HOM05D008706 ORTHO05D010440 5.9e-66 255.8 431 39.9
PGSC0003DMG400009944 Solanum tuberosum HOM05D008706 ORTHO05D010440 3.0e-62 243.4 419 37.9
PGSC0003DMG400009874 Solanum tuberosum HOM05D008706 ORTHO05D010440 5.7e-61 239.2 429 38.9
Peaxi162Scf01164g00027 Petunia axillaris HOM05D008706 ORTHO05D010440 3.8e-57 226.5 413 35.8
Peaxi162Scf00136g00622 Petunia axillaris HOM05D008706 ORTHO05D010440 5.0e-57 226.1 358 41.6
Peaxi162Scf01164g10021 Petunia axillaris HOM05D008706 ORTHO05D010440 1.0e-54 218.4 411 36.5
Nitab4.5_0000368g0410 Nicotiana tabacum HOM05D008706 ORTHO05D010440 3.5e-50 203.4 358 38.5
Sopen12g023150 Solanum pennellii HOM05D008706 ORTHO05D010440 6.5e-49 199.1 178 53.4
Sopen11g027850 Solanum pennellii HOM05D008706 ORTHO05D010440 2.0e-42 177.6 121 67.8
PGSC0003DMG400022280 Solanum tuberosum HOM05D008706 ORTHO05D010440 2.0e-42 177.6 426 32.6
PGSC0003DMG400009945 Solanum tuberosum HOM05D008706 ORTHO05D010440 3.8e-41 173.3 292 39.7
CAN.G1476.3 Capsicum annuum HOM05D008706 ORTHO05D010440 9.4e-40 168.7 411 32.1
Peaxi162Scf00105g00614 Petunia axillaris HOM05D008706 ORTHO05D010440 1.8e-38 164.5 231 42.0
Peaxi162Scf01026g00232 Petunia axillaris HOM05D008706 ORTHO05D010440 7.7e-34 149.1 264 38.3
CAN.G396.6 Capsicum annuum HOM05D008706 ORTHO05D010440 1.1e-27 128.6 299 31.4
Nitab4.5_0003349g0020 Nicotiana tabacum HOM05D008706 ORTHO05D010440 2.8e-23 114.0 212 37.3
Sed0013342 Sechium edule HOM05D021455 ORTHO05D010440 4.4e-21 106.7 410 25.1
ClCG00G005860 Citrullus lanatus HOM05D021455 ORTHO05D010440 2.3e-17 94.4 407 26.0
ClCG07G001350 Citrullus lanatus HOM05D021455 ORTHO05D010440 2.3e-17 94.4 407 26.0
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 1.1e-16 92.0 422 23.9
Migut.L01260 Erythranthe guttata HOM05D001729 ORTHO05D001155 1.2e-15 88.6 386 22.0
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 1.1e-14 85.5 428 23.1
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 2.3e-14 84.3 393 22.6
Peaxi162Scf00105g00613 Petunia axillaris HOM05D008706 ORTHO05D010440 4.0e-14 83.6 149 38.3
Aqoxy7G01704 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 5.2e-14 83.2 433 23.3
Nitab4.5_0006875g0050 Nicotiana tabacum HOM05D008706 ORTHO05D010440 5.2e-14 83.2 142 38.7
Duzib177G0763 Durio zibethinus HOM05D007779 ORTHO05D009863 4.4e-13 80.1 442 24.7
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 3.7e-12 77.0 414 23.2
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 6.4e-12 76.3 293 26.3
QL05p074214 Quercus lobata HOM05D001729 ORTHO05D001155 1.9e-11 74.7 427 21.8
PGR142G1547 Punica granatum HOM05D002743 ORTHO05D002895 3.2e-11 73.9 427 23.0
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 4.1e-11 73.6 433 21.7
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 9.2e-11 72.4 420 21.7
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 9.2e-11 72.4 333 23.1
Thecc.05G277100 Theobroma cacao HOM05D007779 ORTHO05D009863 9.2e-11 72.4 266 25.6
TWI56G0837 Tripterygium wilfordii HOM05D007779 ORTHO05D009863 1.2e-10 72.0 275 24.4
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.6e-10 71.6 420 21.4
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 1.6e-10 71.6 420 21.4
Aqoxy7G01734 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 2.0e-10 71.2 412 22.1
Actinidia26989 Actinidia chinensis HOM05D007779 ORTHO05D010440 2.7e-10 70.9 186 28.0
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.7e-10 70.9 347 23.1
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 2.7e-10 70.9 429 22.6
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.7e-10 70.9 394 22.1
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 6.0e-10 69.7 391 23.8
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 7.8e-10 69.3 336 23.5
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.0e-09 68.9 392 21.9
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 1.0e-09 68.9 276 23.9
Ciclev10019572m.g Citrus clementina HOM05D007779 ORTHO05D009863 1.7e-09 68.2 247 24.3
FAN16G1475 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.7e-09 68.2 329 26.4
COL.COLO4_15414 Corchorus olitorius HOM05D007779 ORTHO05D009863 2.3e-09 67.8 420 21.2
Sed0008915 Sechium edule HOM05D021455 ORTHO05D010440 3.0e-09 67.4 187 28.3
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 3.9e-09 67.0 395 22.0
FvH4_3g32490 Fragaria vesca HOM05D000664 ORTHO05D000491 3.9e-09 67.0 335 23.6
Lj2A946T25 Lonicera japonica HOM05D001729 ORTHO05D001155 3.9e-09 67.0 438 21.9
Aqoxy3G00170 Aquilegia oxysepala HOM05D015194 ORTHO05D009863 5.0e-09 66.6 422 22.7
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 5.0e-09 66.6 417 21.6
FAN11G0439 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.0e-09 66.6 335 23.6
Gorai.004G248800 Gossypium raimondii HOM05D007779 ORTHO05D009863 5.0e-09 66.6 275 24.0
Aqoxy4G02867 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 6.6e-09 66.2 345 24.9
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 6.6e-09 66.2 408 24.0
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 6.6e-09 66.2 410 20.7
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 8.6e-09 65.9 288 22.2
Migut.O00261 Erythranthe guttata HOM05D002420 ORTHO05D002422 8.6e-09 65.9 306 25.2
Gohir.D08G234100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 8.6e-09 65.9 273 23.4
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 8.6e-09 65.9 391 20.5
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.5e-08 64.3 430 21.9
QL93p0073_1187 Quercus lobata HOM05D002420 ORTHO05D002422 2.5e-08 64.3 389 20.6
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 4.3e-08 63.5 329 23.1
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 4.3e-08 63.5 329 23.1
Prupe.1G112700 Prunus persica HOM05D007162 ORTHO05D007631 4.3e-08 63.5 411 22.6
Rhsim08G0220200 Rhododendron simsii HOM05D001729 ORTHO05D001155 4.3e-08 63.5 218 25.7
Aqoxy6G00425 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 5.6e-08 63.2 419 20.3
Aqoxy7G00772 Aquilegia oxysepala HOM05D008706 ORTHO05D010440 5.6e-08 63.2 259 23.9
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.6e-08 63.2 411 22.9
QL05p077107 Quercus lobata HOM05D002420 ORTHO05D002422 5.6e-08 63.2 389 20.3
Aqoxy2G02516 Aquilegia oxysepala HOM05D007779 ORTHO05D009863 7.3e-08 62.8 418 23.7
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 7.3e-08 62.8 401 23.4
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 9.5e-08 62.4 295 23.4
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 9.5e-08 62.4 432 19.9
Gohir.A08G217100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 1.2e-07 62.0 275 22.9
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 1.6e-07 61.6 433 21.2
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 1.6e-07 61.6 408 23.3
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.1e-07 61.2 398 21.1
QL04p012671 Quercus lobata HOM05D002420 ORTHO05D002422 2.1e-07 61.2 400 22.8
QL04p012713 Quercus lobata HOM05D002420 ORTHO05D002422 2.1e-07 61.2 399 22.1
QL04p013477 Quercus lobata HOM05D002420 ORTHO05D002422 2.1e-07 61.2 399 22.1
QL04p013515 Quercus lobata HOM05D002420 ORTHO05D002422 2.1e-07 61.2 400 22.8
Duzib170G0599 Durio zibethinus HOM05D001729 ORTHO05D001155 2.8e-07 60.8 409 22.7
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 2.8e-07 60.8 402 22.1
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 2.8e-07 60.8 386 22.5
AL8G23420 Arabidopsis lyrata HOM05D007162 ORTHO05D007631 3.6e-07 60.5 399 23.8
COL.COLO4_37368 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.6e-07 60.5 283 23.3
Potri.019G013900 Populus trichocarpa HOM05D007779 ORTHO05D009863 3.6e-07 60.5 138 29.0
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 4.7e-07 60.1 382 20.7
Dinv04029 Davidia involucrata HOM05D001729 ORTHO05D001155 4.7e-07 60.1 192 30.2
QL04p013429 Quercus lobata HOM05D002420 ORTHO05D002422 4.7e-07 60.1 399 22.1
Cfa006387 Carpinus fangiana HOM05D007779 ORTHO05D009863 6.2e-07 59.7 421 21.9
Haze_04390 Corylus avellana HOM05D007779 ORTHO05D009863 6.2e-07 59.7 421 22.1
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 6.2e-07 59.7 390 22.8
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 8.1e-07 59.3 374 22.7
Gohir.A12G196800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 8.1e-07 59.3 424 21.9
QL04p012751 Quercus lobata HOM05D002420 ORTHO05D002422 8.1e-07 59.3 400 21.5
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 8.1e-07 59.3 429 23.3
Aqoxy6G00426 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 1.1e-06 58.9 254 24.0
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 1.1e-06 58.9 382 23.8
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.1e-06 58.9 393 21.4
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 1.1e-06 58.9 217 25.8
Nitab4.5_0002715g0110 Nicotiana tabacum HOM05D000488 ORTHO05D010440 1.1e-06 58.9 86 38.4
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 1.1e-06 58.9 220 26.8
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 1.1e-06 58.9 217 25.8
Os01g0379400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 1.4e-06 58.5 431 20.6
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 1.4e-06 58.5 419 22.0
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 1.8e-06 58.2 312 23.4
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 1.8e-06 58.2 239 28.0
Os08g0529400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D010075 1.8e-06 58.2 381 23.4
PSO541G4811 Papaver somniferum HOM05D008326 ORTHO05D001155 1.8e-06 58.2 331 21.8
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 1.8e-06 58.2 386 21.8
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 1.8e-06 58.2 334 22.2
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 1.8e-06 58.2 429 23.1
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 2.3e-06 57.8 244 25.4
CAN.G311.44 Capsicum annuum HOM05D008706 ORTHO05D010440 2.3e-06 57.8 58 50.0
CiPaw.07G070500 Carya illinoinensis HOM05D007779 ORTHO05D009863 2.3e-06 57.8 263 22.4
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 2.3e-06 57.8 222 25.7
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 2.3e-06 57.8 221 25.3
Sabra19G0016500 Salix brachista HOM05D007779 ORTHO05D009863 2.3e-06 57.8 141 32.6
FvH4_4g20690 Fragaria vesca HOM05D007162 ORTHO05D007631 3.1e-06 57.4 221 24.9
FAN12G3043 Fragaria x ananassa HOM05D007162 ORTHO05D007631 3.1e-06 57.4 221 25.3
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 3.1e-06 57.4 273 19.8
FAN02G0583 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.0e-06 57.0 229 24.5
Hma1.2p1_0013F.1_g008260 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 4.0e-06 57.0 217 25.8
MSTRG.10171 Avicennia marina HOM05D007162 ORTHO05D007631 5.2e-06 56.6 219 26.9
Cfa015679 Carpinus fangiana HOM05D007162 ORTHO05D007631 5.2e-06 56.6 218 23.9
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 5.2e-06 56.6 335 23.9
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 5.2e-06 56.6 222 25.7
PSO063G7044 Papaver somniferum HOM05D008326 ORTHO05D001155 5.2e-06 56.6 211 21.3
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 5.2e-06 56.6 221 24.9
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 6.8e-06 56.2 278 23.4
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 6.8e-06 56.2 278 23.4
FAN09G2508 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.8e-06 56.2 229 25.8
Oeu016027.1 Olea europaea HOM05D007779 ORTHO05D009863 6.8e-06 56.2 260 22.7
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 6.8e-06 56.2 222 25.7
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.9e-06 55.8 403 21.1
MBI07_g31506_MAGBIO Magnolia biondii HOM05D010448 ORTHO05D012537 8.9e-06 55.8 420 21.0
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 8.9e-06 55.8 221 24.0
QL04p013554 Quercus lobata HOM05D002420 ORTHO05D002422 8.9e-06 55.8 425 20.9
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 8.9e-06 55.8 219 25.1


User provided reference genes

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