Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.0e-65 252.3 129 100.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-63 245.0 129 96.9
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.2e-63 244.6 129 96.1
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.5e-63 244.2 129 96.1
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.3e-61 238.8 125 97.6
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-60 236.1 129 93.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.8e-56 221.5 126 86.5
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.8e-56 221.5 127 85.8
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.5e-56 220.3 124 91.9
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.4e-55 219.5 127 83.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.4e-55 219.5 127 84.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.9e-55 219.2 126 85.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 3.2e-55 218.4 127 84.3
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 4.2e-55 218.0 127 85.0
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.2e-55 218.0 129 83.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 4.2e-55 218.0 127 84.3
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.2e-55 218.0 128 85.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 4.2e-55 218.0 129 82.9
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.5e-55 217.6 125 88.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 7.2e-55 217.2 127 82.7
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-54 216.5 127 84.3
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.2e-54 216.5 126 82.5
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 82.7
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 82.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 81.9
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.1e-54 215.7 126 85.7
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.7e-54 215.3 127 81.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.7e-54 214.5 125 84.8
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.4e-53 213.0 126 84.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 3.9e-53 211.5 128 83.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.9e-53 211.5 127 81.1
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 5.2e-53 211.1 123 87.8
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.1e-52 209.9 129 81.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.6e-52 208.8 120 85.8
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-52 208.8 123 84.6
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.6e-52 208.8 129 79.8
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.6e-52 208.8 126 83.3
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.3e-52 208.4 127 79.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 3.3e-52 208.4 127 80.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.4e-52 208.0 126 80.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.7e-52 207.6 126 80.2
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 9.7e-52 206.8 123 84.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.3e-51 206.5 121 82.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.3e-51 206.5 127 79.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.7e-51 206.1 124 82.3
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.7e-51 206.1 125 81.6
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.7e-51 206.1 128 77.3
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.7e-51 206.1 118 86.4
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 6.3e-51 204.1 120 82.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.7
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.8e-50 202.6 125 80.0
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.4e-50 202.2 121 81.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 5.3e-50 201.1 120 80.0
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.3e-50 201.1 120 79.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 7.0e-50 200.7 123 81.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 9.1e-50 200.3 123 80.5
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.2e-49 199.9 124 80.6
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.2e-49 199.9 124 78.2
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.6e-49 199.5 123 78.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-49 199.1 123 80.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.0e-49 199.1 128 78.9
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.0e-49 199.1 124 77.4
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.6e-49 198.7 124 78.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.6e-49 198.7 124 78.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.6e-49 198.7 119 80.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.5e-49 198.4 124 77.4
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 124 77.4
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.5e-49 198.4 124 77.4
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.5e-49 198.4 121 79.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.5e-49 198.0 127 79.5
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.7e-49 197.2 118 80.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.0e-48 196.8 119 79.8
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-48 196.8 127 78.7
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.0e-48 196.8 121 79.3
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.0e-48 196.8 128 76.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.3e-48 196.4 123 77.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.2e-48 195.7 121 77.7
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.2e-48 195.7 126 77.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.2e-48 195.7 121 78.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 2.9e-48 195.3 124 75.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.8e-48 194.9 120 76.7
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 6.5e-48 194.1 128 73.4
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 8.5e-48 193.7 116 81.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 8.5e-48 193.7 124 81.5
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-47 193.4 125 77.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-47 192.2 123 77.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.5e-47 192.2 120 79.2
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.2e-47 191.8 116 79.3
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.2e-47 191.8 120 79.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 5.5e-47 191.0 114 81.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 5.5e-47 191.0 123 73.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.6e-46 188.3 124 73.4
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 124 73.4
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 4.7e-46 188.0 117 77.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 6.1e-46 187.6 113 82.3
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-45 186.0 104 88.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.3e-45 185.7 121 72.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.0e-45 184.9 110 85.5
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.0e-45 184.9 108 87.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 6.7e-45 184.1 124 71.8
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 7.5e-44 180.6 121 71.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-42 176.4 120 72.5
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.1e-42 175.3 123 70.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.1e-42 175.3 98 90.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-41 173.3 123 68.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.0e-41 172.6 98 87.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.7e-41 172.2 120 72.5
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.7e-41 170.6 120 70.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.3e-40 169.9 105 76.2
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.7e-40 169.5 120 71.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.8e-40 168.3 89 91.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.0e-40 167.9 98 84.7
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.5e-40 167.5 123 68.3
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-39 166.4 99 83.8
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.2e-39 164.9 104 78.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.6e-38 162.9 129 66.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.1e-38 161.0 89 86.5
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.1e-38 161.0 120 70.8
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-37 158.7 125 68.0
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 4.0e-37 158.3 95 84.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 8.8e-37 157.1 118 68.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-36 156.4 108 71.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 4.4e-36 154.8 124 64.5
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 9.8e-36 153.7 98 78.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 9.8e-36 153.7 98 78.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 6.3e-35 151.0 118 66.1
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.4e-34 149.1 106 69.8
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-33 146.0 99 72.7
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.9e-33 144.4 86 82.6
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-32 143.3 102 72.5
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 2.3e-32 142.5 83 79.5
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.9e-32 142.1 86 77.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.6e-32 140.6 126 61.1
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.1e-30 136.0 108 64.8
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-29 133.3 124 49.2
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.0e-28 129.4 65 95.4
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.4e-28 128.3 116 60.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.4e-28 128.3 115 53.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.8e-28 127.1 88 63.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.8e-27 125.6 85 74.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 6.3e-27 124.4 127 55.1
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 5.4e-26 121.3 117 49.6
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 5.4e-26 121.3 120 49.2
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 5.4e-26 121.3 113 51.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.2e-25 120.2 123 50.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.6e-25 119.8 113 49.6
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.8e-25 117.5 118 52.5
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.7e-24 116.3 130 50.0
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.3e-24 115.9 115 47.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.9e-24 115.5 119 50.4
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 6.6e-24 114.4 131 48.1
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.3e-23 112.1 109 50.5
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.0e-22 107.5 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 5.7e-20 101.3 61 80.3
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.2e-10 68.9 75 49.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-08 63.9 60 41.7
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.0e-08 63.9 35 82.9


User provided reference genes

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