Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.7e-225 784.6 426 100.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 6.2e-212 740.7 428 89.5
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 3.4e-210 734.9 428 88.8
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.9e-209 731.9 434 91.2
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.2e-204 716.5 430 88.4
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.3e-189 665.2 469 80.0
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 4.2e-184 648.3 392 89.8
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.8e-177 625.2 435 74.5
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.0e-174 617.1 438 74.0
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 8.7e-174 614.0 431 73.5
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.1e-173 613.6 431 74.5
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.3e-173 611.7 424 74.8
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-171 607.1 424 77.6
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 2.4e-171 605.9 424 74.3
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 3.1e-171 605.5 435 73.6
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.1e-171 605.5 424 78.5
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.3e-171 604.7 426 77.7
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 9.0e-171 604.0 427 73.5
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.7e-169 599.7 437 73.5
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 3.8e-169 598.6 429 76.7
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.2e-167 593.6 437 71.9
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.6e-167 593.2 436 71.3
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.1e-167 592.8 427 71.9
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.3e-166 590.1 426 70.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.3e-166 590.1 426 72.1
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 5.1e-166 588.2 433 73.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 6.7e-166 587.8 426 71.4
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 6.7e-166 587.8 421 72.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 6.7e-166 587.8 426 74.4
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 6.7e-166 587.8 413 74.1
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.5e-165 586.6 410 74.1
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.5e-165 586.6 410 74.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.5e-165 585.9 410 73.9
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.5e-165 585.9 411 74.0
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.5e-165 585.9 410 73.9
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.5e-165 585.9 410 73.9
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.5e-165 585.9 447 69.4
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 9.7e-165 583.9 413 76.3
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.7e-164 582.0 433 72.5
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.4e-163 580.1 417 74.6
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 3.1e-163 578.9 417 72.7
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.5e-162 576.6 432 71.3
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.6e-162 575.9 430 71.2
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.6e-162 575.9 433 69.5
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 5.9e-162 574.7 422 73.0
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 7.6e-162 574.3 412 72.3
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.3e-161 573.5 420 73.1
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.0e-161 571.6 424 74.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 6.5e-161 571.2 412 71.8
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 6.5e-161 571.2 421 71.7
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 8.5e-161 570.9 412 71.8
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 8.5e-161 570.9 432 69.9
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.4e-160 570.1 432 69.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 2.5e-160 569.3 467 69.0
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.2e-160 568.5 410 72.9
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.5e-160 568.2 426 70.4
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 5.5e-160 568.2 416 72.8
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.2e-160 567.8 427 70.7
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 7.2e-160 567.8 414 70.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 6.1e-159 564.7 435 68.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.9e-159 564.3 423 70.4
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.0e-158 563.9 412 71.4
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.4e-158 563.5 419 69.7
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.4e-158 563.5 432 71.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-158 563.1 423 70.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.3e-158 562.8 426 69.7
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 3.0e-158 562.4 428 71.0
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.1e-157 560.5 422 71.8
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.3e-157 558.5 449 69.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 9.7e-157 557.4 425 68.0
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.1e-155 553.9 439 68.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.1e-155 553.9 422 68.7
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.4e-155 553.5 422 68.2
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.4e-155 553.5 442 67.2
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.8e-155 553.1 429 72.5
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 4.1e-155 552.0 421 68.9
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 6.9e-155 551.2 414 69.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 9.1e-155 550.8 406 71.2
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.5e-154 550.1 424 70.5
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.0e-154 549.7 418 67.7
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 2.6e-154 549.3 429 67.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 7.7e-154 547.7 406 71.4
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.0e-153 547.4 423 67.6
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.2e-153 546.2 471 63.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.9e-153 545.8 401 72.6
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 5.0e-153 545.0 429 67.4
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.1e-152 543.9 423 67.4
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.4e-152 543.5 421 67.5
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.1e-151 538.1 432 67.4
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.0e-149 533.1 421 66.3
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.7e-149 531.6 440 66.6
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.7e-148 530.0 423 69.3
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.4e-147 526.9 423 66.0
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.4e-147 526.2 462 66.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 9.1e-147 524.2 419 68.7
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 3.8e-145 518.8 425 67.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.5e-144 516.2 429 63.4
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 7.2e-144 514.6 429 67.1
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 9.4e-144 514.2 378 70.6
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 5.2e-142 508.4 423 65.0
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 6.7e-142 508.1 426 66.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 9.7e-141 504.2 514 55.6
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 7.0e-139 498.0 419 62.8
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.6e-138 496.9 522 56.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 5.0e-137 491.9 428 64.5
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 8.5e-137 491.1 433 62.8
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 8.5e-137 491.1 421 63.2
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 6.5e-129 464.9 375 68.3
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 8.5e-129 464.5 484 57.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.6e-127 459.1 372 71.8
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.1e-127 458.4 423 61.2
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 6.8e-126 454.9 416 59.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.0e-125 453.4 382 66.8
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 5.0e-121 438.7 416 57.9
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 5.0e-121 438.7 419 59.9
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 9.5e-120 434.5 405 57.5
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.6e-117 426.4 429 55.2
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.6e-114 417.2 395 60.5
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 7.3e-112 408.3 363 62.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.2e-111 407.5 320 69.4
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 6.8e-110 401.7 409 53.3
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-109 400.2 397 55.9
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 6.0e-106 388.7 341 62.2
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-105 387.9 420 52.9
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.1e-104 384.4 431 53.6
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.3e-96 355.1 427 49.6
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.9e-92 343.2 353 55.5
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.6e-66 257.7 372 41.7
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.7e-60 237.7 419 36.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 6.4e-60 235.7 209 58.9
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 2.2e-39 167.5 204 55.9
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 7.2e-27 125.9 83 73.5
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 4.4e-16 90.1 53 83.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.1e-14 85.5 45 86.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.1e-14 85.5 45 86.7
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 4.9e-07 60.1 53 60.4


User provided reference genes

Program Settings