Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.4e-73 280.8 329 100.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 7.2e-67 258.5 326 97.2
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 6.1e-66 255.4 326 96.6
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 6.1e-66 255.4 326 96.6
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.1e-65 252.3 329 95.1
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-64 251.1 329 94.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 4.5e-61 239.2 329 92.7
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.0e-60 238.0 329 92.7
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-60 236.9 317 95.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.9e-60 236.5 317 95.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.0e-60 235.7 321 94.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.5e-60 235.0 323 93.5
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-59 234.2 307 97.1
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.5e-59 233.4 307 96.7
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.2e-59 233.0 325 91.7
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.2e-59 233.0 328 92.7
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 4.2e-59 232.6 321 91.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 5.5e-59 232.3 325 92.6
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.2e-59 231.9 307 96.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-58 231.1 329 89.4
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-58 230.7 322 93.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-58 230.7 322 93.2
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.1e-58 230.3 325 92.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.7e-58 229.9 322 92.9
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.7e-58 229.9 330 93.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.7e-58 229.9 319 94.7
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.7e-58 229.2 329 91.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.0e-58 228.4 329 90.9
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 8.0e-58 228.4 318 93.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.0e-57 228.0 324 92.6
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.0e-57 228.0 322 92.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-57 227.6 325 92.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.8e-57 227.3 322 92.9
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.8e-57 227.3 326 92.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.0e-57 226.5 333 91.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.2e-57 225.7 323 91.0
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 6.7e-57 225.3 321 93.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.7e-57 225.3 329 90.6
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-56 224.6 320 92.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 323 92.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.5e-56 224.2 323 92.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.5e-56 224.2 322 93.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.5e-56 224.2 324 92.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.5e-56 224.2 322 92.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.5e-56 224.2 322 92.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.5e-56 224.2 323 92.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.0e-56 223.8 326 92.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.0e-56 223.8 331 87.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.6e-56 223.4 324 90.7
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.6e-56 223.4 345 64.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.3e-56 223.0 331 90.9
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.3e-56 223.0 332 91.6
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.4e-56 222.6 322 91.3
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 5.7e-56 222.2 323 92.6
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 5.7e-56 222.2 322 92.5
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 5.7e-56 222.2 305 91.1
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 5.7e-56 222.2 322 91.9
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.4e-56 221.9 325 88.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 9.7e-56 221.5 329 91.8
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 9.7e-56 221.5 338 80.8
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.3e-55 221.1 326 91.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.3e-55 221.1 324 91.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-55 220.7 322 92.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.7e-55 219.5 325 91.7
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 4.8e-55 219.2 322 91.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 322 90.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.1e-54 218.0 327 89.6
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-54 218.0 329 89.7
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-54 217.6 321 92.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 90.7
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.8e-54 217.2 329 90.0
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.4e-54 216.9 327 88.1
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-54 216.9 326 91.7
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.1e-54 216.5 326 91.4
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 3.1e-54 216.5 324 91.4
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.1e-54 216.1 326 90.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 7.0e-54 215.3 321 91.0
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 9.1e-54 214.9 320 89.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-53 214.5 321 91.9
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-53 214.5 321 90.7
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.6e-53 214.2 328 89.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.6e-53 214.2 326 91.4
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.6e-53 213.4 326 89.9
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.5e-53 213.0 321 91.6
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.5e-53 213.0 321 91.6
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.5e-53 213.0 321 91.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.5e-53 213.0 321 91.3
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 91.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 7.7e-53 211.8 297 95.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.0e-52 211.5 332 88.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 305 91.5
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 328 89.6
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 372 68.0
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 334 79.3
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.5e-52 208.4 329 87.8
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.1e-51 208.0 325 89.5
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 328 88.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.2e-51 206.5 319 90.6
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.2e-51 206.5 328 88.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.5e-51 205.7 305 93.1
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 7.2e-51 205.3 322 76.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.2e-51 205.3 353 66.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-50 204.5 328 88.4
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.1e-50 203.8 322 90.4
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.6e-50 203.0 244 91.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.7e-50 202.6 337 74.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 4.7e-50 202.6 296 92.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 8.0e-50 201.8 330 77.3
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 5.2e-49 199.1 327 88.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 6.7e-49 198.7 242 91.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.2e-48 198.0 326 85.6
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.0e-48 197.2 243 88.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 305 90.5
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.6e-48 196.8 346 85.3
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 7.5e-48 195.3 347 71.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.5e-48 195.3 329 80.2
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.5e-48 195.3 329 80.2
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.8e-47 192.6 346 77.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.8e-46 190.7 327 87.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 329 83.9
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-46 189.9 332 84.3
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.1e-46 189.9 332 84.3
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.1e-46 189.9 322 87.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.1e-46 189.5 326 86.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.1e-46 189.5 322 88.5
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.3e-46 189.1 335 76.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.9e-45 185.7 247 70.9
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.7e-45 185.3 326 74.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.8e-44 183.0 322 88.2
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.1e-43 181.4 329 69.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.9e-43 180.6 238 89.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.5e-43 179.1 98 86.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 7.2e-43 178.7 327 83.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.1e-42 177.2 96 90.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.7e-42 176.0 322 83.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 4.7e-42 176.0 339 81.4
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 4.7e-42 176.0 327 84.7
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.4e-41 174.5 331 82.5
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.3e-41 173.7 222 94.1
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 6.8e-41 172.2 328 81.7
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 8.8e-41 171.8 327 84.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.2e-40 171.4 328 83.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.0e-40 170.6 306 54.6
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 5.7e-40 169.1 97 84.5
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.3e-39 167.9 95 83.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.3e-39 167.9 95 83.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.8e-39 166.0 94 85.1
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.4e-38 163.7 94 84.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 4.1e-38 162.9 96 83.3
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 4.1e-38 162.9 96 83.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.5e-37 159.8 95 80.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.5e-37 159.5 81 88.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.0e-36 158.3 93 82.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.7e-36 157.5 326 82.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.3e-33 147.1 244 79.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-30 137.5 73 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.2e-29 134.8 324 76.5
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.7e-29 133.7 304 79.6
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.9e-29 132.5 101 63.4
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.3e-27 126.3 276 81.2
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.0e-25 121.7 82 73.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.9e-20 103.2 65 76.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.6e-20 102.4 73 69.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 4.7e-18 96.3 50 84.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.0e-18 95.5 118 90.7
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.1e-17 95.1 119 56.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-17 94.4 258 88.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.3e-17 94.0 248 71.4
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.4e-16 89.7 64 62.5
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.2e-13 81.6 42 95.2
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.1e-13 80.9 62 61.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 7.8e-13 79.0 68 63.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.1e-11 75.1 42 85.7
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 9.5e-11 72.0 42 83.3
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.2e-09 66.2 103 46.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.4e-08 63.2 103 44.7
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-08 63.2 40 75.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-07 61.2 43 74.4


User provided reference genes

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