Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.3e-248 861.3 449 100.0
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.3e-188 663.3 446 78.7
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.9e-188 662.1 449 77.5
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.6e-186 656.4 449 76.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 8.0e-186 654.1 449 76.2
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.3e-179 632.1 422 79.1
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 5.8e-168 594.7 448 69.4
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 7.5e-168 594.3 396 75.5
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-134 484.2 394 67.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 1.2e-133 480.7 395 63.8
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.7e-133 479.6 403 62.0
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 2.3e-132 476.5 394 60.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 5.6e-131 471.9 385 60.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 8.1e-130 468.0 394 58.9
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.1e-126 457.6 396 58.6
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 7.1e-126 454.9 456 54.2
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.7e-125 453.0 355 65.4
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.3e-124 450.7 394 60.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.5e-123 446.4 451 55.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.5e-123 446.4 397 59.7
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 4.3e-123 445.7 395 58.7
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 5.6e-123 445.3 396 58.1
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.8e-122 443.0 396 57.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.1e-121 439.5 396 57.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 2.0e-120 436.8 317 67.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.1e-117 426.8 398 54.3
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.5e-117 426.0 397 57.9
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.1e-113 414.5 401 53.6
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.0e-112 410.2 429 50.1
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.9e-111 406.4 394 55.1
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.0e-111 405.6 407 53.1
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 8.5e-111 404.8 459 48.6
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 3.2e-110 402.9 417 51.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.6e-109 400.6 397 53.7
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 2.7e-109 399.8 394 52.3
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.4e-108 397.5 393 50.9
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.8e-108 397.1 398 52.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.3e-108 396.7 411 52.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.3e-108 396.7 398 52.8
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.0e-108 396.4 394 51.5
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 5.1e-108 395.6 398 52.5
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.1e-107 394.4 456 47.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.0e-107 393.7 395 50.9
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 4.3e-107 392.5 395 52.2
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 4.8e-106 389.0 397 50.6
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 4.8e-106 389.0 416 51.2
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.4e-105 387.5 434 49.3
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.4e-105 387.5 469 47.8
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.4e-105 386.7 425 50.8
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 2.4e-105 386.7 398 51.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.1e-105 386.0 393 50.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-105 386.0 393 50.6
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 9.1e-105 384.8 392 51.0
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.6e-104 383.3 394 51.8
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.6e-104 383.3 395 50.6
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.5e-104 382.5 393 49.9
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-103 381.3 393 50.1
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 6.5e-103 378.6 403 50.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.5e-102 376.7 486 46.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.1e-101 373.6 448 48.0
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.6e-101 372.9 449 45.7
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 4.7e-101 372.5 389 50.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.3e-100 370.2 393 49.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.9e-100 369.4 431 46.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 5.1e-100 369.0 405 49.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.4e-99 365.2 395 48.6
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.4e-97 360.1 399 50.1
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.1e-97 359.8 349 54.7
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 9.1e-97 358.2 400 48.8
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.6e-96 356.7 375 50.1
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.0e-95 354.8 402 47.5
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.7e-95 354.0 408 47.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.8e-95 352.8 408 47.1
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.8e-95 352.8 442 45.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 8.5e-95 351.7 408 46.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.5e-94 350.1 392 48.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.2e-94 349.4 392 46.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.7e-93 346.7 392 48.2
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 6.1e-93 345.5 401 47.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.8e-92 344.0 394 47.7
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 3.9e-92 342.8 400 45.0
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.7e-92 342.0 393 47.3
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 3.3e-91 339.7 457 44.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 9.7e-91 338.2 394 45.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.7e-90 337.4 417 46.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 6.3e-90 335.5 394 47.5
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.1e-89 332.8 401 47.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 7.0e-89 332.0 400 44.2
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 9.1e-89 331.6 391 45.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.0e-88 330.5 402 44.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.6e-88 330.1 405 43.0
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.3e-87 327.8 401 46.4
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.3e-87 327.8 396 46.2
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.2e-87 327.0 396 45.5
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.5e-86 323.6 395 44.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 4.2e-86 322.8 395 44.1
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 5.5e-86 322.4 398 43.7
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.0e-84 318.2 601 34.1
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.8e-84 317.4 396 44.4
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.8e-82 310.1 390 43.3
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.1e-81 308.1 421 41.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.4e-81 307.0 396 44.2
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 9.1e-81 305.1 394 42.6
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.2e-80 304.7 394 42.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.2e-80 304.7 394 42.4
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.2e-80 304.7 394 42.4
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.2e-80 304.7 394 42.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-80 304.7 403 44.4
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 7.7e-80 302.0 400 43.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.8e-75 285.0 388 44.1
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 2.2e-74 283.9 394 42.1
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.5e-70 270.4 422 39.3
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.6e-69 267.7 405 41.5
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.1e-65 255.0 354 44.1
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.3e-62 242.3 297 46.1
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.1e-61 240.7 396 39.9
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 9.2e-57 225.3 241 48.1
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 3.5e-56 223.4 218 49.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.0e-55 219.5 309 42.7
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.5e-54 217.2 399 38.1
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.3e-52 210.7 450 34.4
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 5.2e-52 209.5 347 36.6
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.9e-50 203.0 284 40.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.1e-49 199.9 434 34.1
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.5e-46 191.4 237 42.6
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.6e-43 180.6 376 35.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.9e-41 174.5 236 39.0
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.1e-41 172.6 238 41.6
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 9.2e-41 172.2 239 46.0
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 6.0e-40 169.5 230 41.3
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.1e-39 166.4 264 42.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.3e-38 163.3 324 37.7
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.6e-37 160.2 136 58.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 8.9e-36 155.6 110 68.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 5.1e-31 139.8 333 32.7
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.6e-29 134.8 108 62.0
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.8e-29 134.0 398 30.4
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.8e-29 134.0 397 30.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.2e-29 132.9 389 29.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-27 128.3 241 36.1
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 7.6e-27 125.9 444 27.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.8e-26 123.6 141 47.5
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.1e-24 117.9 232 36.2
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-23 114.8 149 45.0
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.8e-21 107.5 141 40.4
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.0e-20 103.6 145 40.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 5.8e-19 99.8 132 46.2
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 9.3e-17 92.4 149 35.6
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.7e-15 86.3 118 37.3
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 8.7e-15 85.9 146 37.7
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.8e-13 80.1 106 40.6
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.2e-11 75.5 102 39.2
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.3e-06 57.0 126 35.7


User provided reference genes

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