Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 5.0e-219 764.2 412 100.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.3e-190 669.8 422 88.2
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.0e-167 592.8 422 79.9
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-161 573.5 366 88.0
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 6.3e-153 544.7 434 71.7
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 5.3e-144 515.0 424 69.6
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 4.7e-140 501.9 372 73.4
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.0e-139 498.8 413 68.3
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.2e-139 498.4 412 67.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 6.7e-139 498.0 340 78.8
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.6e-138 496.1 410 66.8
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 4.4e-138 495.4 425 67.1
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 8.2e-137 491.1 420 67.4
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.3e-134 483.8 417 66.4
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 5.0e-134 481.9 411 65.2
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 5.0e-134 481.9 414 67.4
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 8.5e-134 481.1 439 62.4
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.5e-133 479.6 406 67.5
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-133 479.6 406 67.5
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 2.5e-133 479.6 414 66.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 4.2e-133 478.8 420 66.4
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.7e-132 476.1 406 67.2
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 2.7e-132 476.1 411 65.2
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 3.6e-132 475.7 417 66.7
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 6.1e-132 474.9 330 77.9
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.4e-131 473.8 430 65.1
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.3e-131 473.0 411 65.2
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 6.8e-131 471.5 323 78.3
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.2e-130 470.7 451 62.7
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.5e-130 470.3 415 64.8
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 2.0e-130 469.9 383 68.4
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 3.4e-130 469.2 410 64.9
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.8e-129 466.1 418 62.9
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 4.8e-129 465.3 411 65.7
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 8.3e-129 464.5 428 64.0
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.8e-128 463.4 366 68.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.4e-128 461.8 391 67.8
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 5.4e-128 461.8 421 62.2
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 5.4e-128 461.8 414 63.0
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.1e-128 461.1 365 69.3
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.0e-127 459.9 417 63.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.3e-126 457.2 408 62.0
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.2e-126 456.4 420 62.4
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 3.8e-126 455.7 409 63.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.9e-125 453.4 383 65.8
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 4.7e-124 448.7 425 63.5
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.7e-124 448.7 334 73.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 5.2e-123 445.3 429 59.4
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 4.4e-122 442.2 377 65.0
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 8.3e-121 438.0 338 68.3
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.4e-120 437.2 374 64.2
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.1e-120 436.0 417 60.0
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.4e-120 435.3 410 61.7
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 7.0e-120 434.9 383 62.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.3e-118 429.9 370 63.8
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 5.0e-118 428.7 366 64.2
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.6e-118 428.3 419 61.8
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.5e-117 427.2 385 61.8
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.9e-117 426.8 356 65.7
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 4.3e-117 425.6 369 64.2
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.8e-116 422.9 361 63.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 3.6e-116 422.5 371 64.4
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.7e-116 422.2 457 58.0
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 4.7e-116 422.2 358 65.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.0e-115 421.0 367 64.6
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 8.9e-115 417.9 356 65.2
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.2e-114 417.5 356 65.4
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.6e-114 416.4 360 64.2
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.6e-114 416.4 360 64.2
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 7.5e-114 414.8 409 57.9
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.9e-113 412.9 361 64.3
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 8.3e-113 411.4 347 65.7
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 6.2e-108 395.2 374 58.6
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.2e-106 391.0 415 54.9
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 3.4e-106 389.4 335 62.7
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 2.9e-105 386.3 350 64.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.9e-101 373.6 392 55.1
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.9e-101 373.6 382 56.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.6e-100 370.5 334 59.9
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.1e-100 370.2 341 56.9
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 8.9e-99 364.8 282 69.5
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 8.9e-99 364.8 410 53.4
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 4.4e-98 362.5 316 62.7
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 7.5e-98 361.7 390 56.2
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 2.2e-97 360.1 279 69.9
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.2e-96 356.3 317 63.1
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 9.9e-90 334.7 333 55.9
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 6.4e-89 332.0 399 51.1
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.3e-86 324.3 473 46.7
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 8.1e-84 315.1 219 74.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.9e-81 306.6 344 55.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 8.4e-81 305.1 391 49.6
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.8e-76 290.0 268 61.6
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.4e-75 287.7 417 47.2
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 2.9e-73 280.0 253 60.9
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 8.4e-73 278.5 210 70.5
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 7.1e-72 275.4 273 58.2
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.3e-69 266.2 425 43.3
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 9.0e-67 258.5 227 66.5
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.0e-66 257.3 242 65.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 7.6e-66 255.4 213 65.3
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 4.2e-64 249.6 205 63.4
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 2.2e-57 227.3 413 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 6.5e-57 225.7 254 53.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 2.5e-56 223.8 330 46.1
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 1.0e-54 218.4 329 41.3
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 5.1e-54 216.1 233 58.4
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 2.0e-50 204.1 233 52.8
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.1e-47 194.1 348 37.1
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.0e-46 190.3 186 55.9
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.3e-44 184.9 184 55.4
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 2.2e-44 184.1 227 52.9
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 4.8e-44 183.0 231 51.9
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.7e-41 174.5 337 37.1
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.4e-40 171.4 368 35.1
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 4.2e-40 169.9 154 63.6
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 8.8e-38 162.2 126 69.8
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.5e-37 161.4 165 60.0
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-36 157.1 204 43.6
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-34 151.4 130 62.3
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 5.0e-33 146.4 84 83.3
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 4.7e-31 139.8 292 31.5
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.2e-30 136.3 357 33.6
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.3e-29 133.7 337 31.8
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 5.7e-29 132.9 139 51.1
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.7e-28 131.3 141 48.2
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.2e-28 131.0 118 58.5
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.8e-28 130.6 359 29.8
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 7.0e-27 125.9 98 69.4
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.0e-25 122.1 97 66.0
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.0e-25 122.1 165 44.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.9e-25 120.6 81 81.5
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-24 118.6 139 55.4
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.2e-24 117.1 102 54.9
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.5e-24 116.3 97 66.0
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-23 115.2 392 29.8
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.0e-22 112.1 66 80.3
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.2e-21 108.6 59 86.4
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 5.7e-21 106.3 132 53.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.8e-20 103.2 114 48.2
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.4e-19 101.7 74 74.3
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 3.1e-19 100.5 73 76.7
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 7.7e-18 95.9 69 66.7
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.5e-16 91.7 60 73.3
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 3.0e-14 84.0 74 59.5
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 5.2e-14 83.2 155 37.4
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.3e-12 78.6 59 69.5
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.3e-12 76.3 44 84.1
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 7.0e-11 72.8 401 27.4
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 2.2e-09 67.8 382 27.5
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.9e-08 64.7 353 27.5
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.9e-08 64.7 62 62.9
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 7.2e-08 62.8 35 82.9
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 9.5e-08 62.4 382 25.9
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.2e-07 62.0 45 68.9
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 6.1e-07 59.7 394 25.9
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 6.1e-07 59.7 338 25.4
Prupe.4G155400 Prunus persica HOM05D000943 ORTHO05D008314 1.0e-06 58.9 335 27.2
Nitab4.5_0001386g0010 Nicotiana tabacum HOM05D000943 ORTHO05D008314 2.3e-06 57.8 367 25.9
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.0e-06 57.4 60 48.3
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 4.0e-06 57.0 338 25.4
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 5.2e-06 56.6 370 25.7
Sopen12g001380 Solanum pennellii HOM05D000943 ORTHO05D008314 5.2e-06 56.6 382 25.7
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 8.8e-06 55.8 339 26.0


User provided reference genes

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