Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 7.4e-127 457.2 232 100.0
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 4.8e-118 427.9 232 93.5
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.9e-114 416.0 235 91.1
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 4.2e-114 414.8 235 90.6
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 2.1e-113 412.5 235 89.8
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 6.1e-113 411.0 232 90.5
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 6.5e-107 391.0 230 83.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.9e-106 389.4 236 82.2
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.5e-106 389.0 230 81.7
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.5e-106 389.0 232 82.3
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.2e-106 388.7 234 82.1
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 3.2e-106 388.7 230 82.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 4.2e-106 388.3 236 80.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 9.4e-106 387.1 232 82.3
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 2.1e-105 386.0 230 81.7
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.7e-105 385.6 233 80.7
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.6e-105 385.2 236 81.4
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 4.7e-105 384.8 241 78.8
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 6.1e-105 384.4 225 84.0
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.1e-105 384.4 238 79.4
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.1e-105 384.4 230 81.3
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 6.1e-105 384.4 234 80.8
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 8.0e-105 384.0 233 79.0
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 8.0e-105 384.0 234 80.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 8.0e-105 384.0 225 84.0
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.4e-104 383.3 232 81.5
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.3e-104 382.5 240 80.8
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.0e-104 382.1 233 80.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.0e-104 382.1 233 80.7
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.2e-104 381.3 233 80.3
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.2e-104 381.3 233 80.3
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 6.8e-104 380.9 233 80.3
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.8e-104 380.6 233 80.3
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.8e-104 380.6 233 79.8
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 8.8e-104 380.6 232 80.2
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 8.8e-104 380.6 232 81.0
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.0e-103 379.4 232 81.0
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 2.6e-103 379.0 233 79.4
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.6e-103 379.0 236 79.7
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 2.6e-103 379.0 233 79.8
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.4e-103 378.6 230 81.3
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 4.4e-103 378.3 232 80.2
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.7e-103 377.9 224 80.4
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.7e-103 377.9 224 80.4
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 7.5e-103 377.5 233 80.7
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 9.8e-103 377.1 224 81.7
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.7e-102 376.3 233 80.3
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.7e-102 376.3 225 80.9
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.7e-102 376.3 236 80.9
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 2.2e-102 375.9 224 81.7
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 2.2e-102 375.9 233 79.0
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 2.2e-102 375.9 232 80.6
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 2.8e-102 375.6 232 80.6
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.8e-102 374.8 232 79.3
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 4.8e-102 374.8 234 78.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 6.3e-102 374.4 234 79.9
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 8.3e-102 374.0 239 77.0
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.4e-101 372.5 233 79.8
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.1e-101 372.1 237 78.1
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 4.1e-101 371.7 230 79.6
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 5.4e-101 371.3 236 79.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 5.4e-101 371.3 235 77.9
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 7.0e-101 370.9 233 78.1
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 9.1e-101 370.5 232 78.9
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.6e-100 369.8 247 76.1
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 1.6e-100 369.8 232 79.3
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.0e-100 369.4 236 75.8
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.0e-100 369.4 232 83.6
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 2.0e-100 369.4 232 78.4
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 7.7e-100 367.5 240 76.2
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 2.9e-99 365.5 236 77.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 5.0e-99 364.8 230 77.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 1.1e-98 363.6 233 76.8
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.1e-98 363.6 233 79.0
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 9.5e-98 360.5 232 76.3
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 9.5e-98 360.5 232 76.3
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 1.6e-97 359.8 232 75.0
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.8e-97 359.0 237 76.8
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 3.6e-97 358.6 232 75.4
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 3.6e-97 358.6 226 77.4
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 8.0e-97 357.5 232 73.7
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 8.0e-97 357.5 232 73.7
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 1.0e-96 357.1 233 74.2
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.0e-96 357.1 232 74.1
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.4e-96 356.7 232 73.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.4e-96 356.7 226 76.1
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.8e-96 356.3 232 72.8
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 2.3e-96 355.9 232 78.4
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 3.0e-96 355.5 233 74.2
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.0e-96 355.5 238 75.2
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.0e-96 355.5 222 76.6
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 8.8e-96 354.0 232 74.6
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.5e-95 353.2 225 78.2
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.0e-95 352.8 232 73.7
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 4.4e-95 351.7 230 74.8
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 7.5e-95 350.9 220 76.8
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.7e-94 349.7 226 76.5
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.8e-94 349.0 225 74.7
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.8e-94 349.0 224 75.9
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 5.4e-93 344.7 231 73.6
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.2e-92 343.6 233 72.5
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.2e-92 343.6 304 59.9
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 2.0e-92 342.8 232 72.4
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 5.9e-92 341.3 232 72.4
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 5.0e-91 338.2 318 58.2
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.5e-90 336.7 224 76.8
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 2.5e-90 335.9 233 73.8
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.2e-89 333.6 256 65.2
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.2e-89 333.6 233 70.8
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.2e-89 333.6 225 71.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.0e-88 328.9 187 85.6
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.4e-87 325.5 232 72.0
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 8.3e-86 320.9 232 69.8
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 5.0e-83 311.6 232 66.4
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 6.6e-83 311.2 222 66.2
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 2.5e-82 309.3 232 66.4
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 5.6e-82 308.1 198 77.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 8.0e-81 304.3 192 76.6
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 8.0e-81 304.3 230 63.0
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.3e-80 302.8 220 64.5
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.3e-80 302.8 237 66.2
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 6.8e-80 301.2 188 76.1
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 6.4e-78 294.7 232 59.9
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.3e-75 286.2 198 72.7
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.7e-70 270.0 168 78.6
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 8.6e-67 257.7 197 65.5
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.5e-66 256.1 224 60.3
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 1.1e-64 250.8 163 77.3
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 4.2e-53 212.2 150 66.7
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.3e-51 206.5 218 50.0
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 3.1e-40 169.5 119 65.5
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.2e-36 157.5 105 75.2
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 2.0e-31 140.2 189 36.5
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.1e-29 134.4 96 76.0
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 3.1e-24 116.3 209 34.0
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 3.1e-08 63.2 72 44.4


User provided reference genes

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