Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G533.5 Capsicum annuum HOM05D007778 ORTHO05D009819 4.8e-21 103.6 53 100.0
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 1.3e-15 85.5 50 86.0
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 3.1e-12 74.3 49 75.5
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 2.0e-11 71.6 49 73.5
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 7.6e-11 69.7 49 69.4
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 2.2e-10 68.2 49 69.4
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 3.2e-09 64.3 50 60.0
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 4.2e-09 63.9 48 66.7
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 7.1e-09 63.2 49 63.3
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 1.6e-08 62.0 49 59.2
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 2.1e-08 61.6 50 56.0
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 2.1e-08 61.6 49 59.2
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 2.7e-08 61.2 48 64.6
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 2.7e-08 61.2 48 64.6
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 2.7e-08 61.2 49 59.2
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 3.5e-08 60.8 49 57.1
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 3.5e-08 60.8 49 59.2
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 4.6e-08 60.5 50 56.0
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 4.6e-08 60.5 48 58.3
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 6.0e-08 60.1 49 57.1
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 7.9e-08 59.7 49 57.1
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 7.9e-08 59.7 49 57.1
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 7.9e-08 59.7 52 59.6
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 7.9e-08 59.7 49 61.2
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 1.0e-07 59.3 49 55.1
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 1.0e-07 59.3 48 56.2
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 1.0e-07 59.3 49 59.2
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.3e-07 58.9 47 59.6
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 2.3e-07 58.2 48 60.4
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 3.0e-07 57.8 47 57.4
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 3.0e-07 57.8 47 57.4
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 3.9e-07 57.4 49 53.1
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 5.1e-07 57.0 48 56.2
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.1e-07 57.0 48 56.2
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.1e-07 57.0 48 56.2
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.1e-07 57.0 48 56.2
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 5.1e-07 57.0 50 54.0
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 5.1e-07 57.0 49 57.1
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 5.1e-07 57.0 48 56.2
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 6.7e-07 56.6 49 55.1
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 6.7e-07 56.6 47 55.3
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 6.7e-07 56.6 47 55.3
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 8.7e-07 56.2 49 53.1
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 1.1e-06 55.8 49 53.1
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 1.1e-06 55.8 49 53.1
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 1.1e-06 55.8 49 53.1
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 1.5e-06 55.5 48 56.2
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.5e-06 55.5 48 56.2
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 1.5e-06 55.5 49 57.1
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 1.5e-06 55.5 48 54.2
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.9e-06 55.1 48 54.2
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 2.5e-06 54.7 49 51.0
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 3.3e-06 54.3 49 55.1
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 3.3e-06 54.3 49 51.0
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 4.3e-06 53.9 48 54.2
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 7.4e-06 53.1 48 52.1
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 7.4e-06 53.1 48 52.1
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 9.6e-06 52.8 48 52.1


User provided reference genes

Program Settings