Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.9e-60 235.0 114 100.0
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 4.5e-16 88.2 61 67.2
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.9e-16 87.0 48 75.0
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 9.9e-16 87.0 48 75.0
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.3e-15 86.7 48 75.0
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 4.9e-15 84.7 48 75.0
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-14 83.6 48 72.9
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.1e-14 83.6 48 72.9
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.4e-14 83.2 48 72.9
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.9e-14 82.8 48 72.9
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.9e-14 82.8 48 72.9
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 2.4e-14 82.4 48 70.8
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.4e-14 82.4 55 65.5
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.4e-14 82.4 55 65.5
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 2.4e-14 82.4 48 70.8
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 2.4e-14 82.4 48 72.9
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 2.4e-14 82.4 48 72.9
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 3.2e-14 82.0 48 70.8
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.2e-14 81.6 48 72.9
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.2e-14 81.6 48 72.9
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.2e-14 81.6 48 72.9
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.2e-14 81.6 48 72.9
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 68.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 68.8
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 5.4e-14 81.3 48 70.8
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 68.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 7.1e-14 80.9 61 57.4
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 70.8
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 7.1e-14 80.9 48 68.8
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 9.3e-14 80.5 48 68.8
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.3e-14 80.5 48 68.8
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 9.3e-14 80.5 48 68.8
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 68.8
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.2e-13 80.1 54 64.8
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 68.8
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 66.7
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 68.8
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 68.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.2e-13 80.1 48 70.8
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.6e-13 79.7 59 59.3
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.6e-13 79.7 59 59.3
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.6e-13 79.7 59 59.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.6e-13 79.7 48 70.8
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.6e-13 79.7 48 70.8
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.1e-13 79.3 48 68.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.1e-13 79.3 48 68.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.1e-13 79.3 48 66.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.1e-13 79.3 47 70.2
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.1e-13 79.3 48 66.7
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.1e-13 79.3 48 68.8
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.7e-13 79.0 48 68.8
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.7e-13 79.0 48 66.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 2.7e-13 79.0 48 68.8
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.5e-13 78.6 48 64.6
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 3.5e-13 78.6 48 66.7
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.5e-13 78.6 48 70.8
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.6e-13 78.2 48 66.7
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 6.0e-13 77.8 48 64.6
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 6.0e-13 77.8 48 66.7
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.0e-13 77.8 48 66.7
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.0e-13 77.8 48 66.7
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 6.0e-13 77.8 48 66.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 7.9e-13 77.4 47 68.1
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 7.9e-13 77.4 48 64.6
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 7.9e-13 77.4 48 64.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.0e-12 77.0 48 66.7
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.8e-12 76.3 48 66.7
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.3e-12 75.9 48 64.6
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.3e-12 75.9 47 63.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 5.1e-12 74.7 45 68.9
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 5.1e-12 74.7 45 68.9
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 5.1e-12 74.7 48 66.7
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.1e-12 74.7 48 60.4
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 6.7e-12 74.3 59 55.9
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 8.7e-12 73.9 48 62.5
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 8.7e-12 73.9 48 62.5
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 8.7e-12 73.9 48 62.5
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 5.6e-11 71.2 59 52.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 7.4e-11 70.9 45 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.3e-10 70.1 47 57.4
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.8e-09 66.2 94 38.3
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.3e-09 64.7 48 60.4
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.5e-08 63.2 47 55.3
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.6e-08 62.4 53 56.6
Nitab4.5_0010549g0010 Nicotiana tabacum HOM05D002179 ORTHO05D002232 3.4e-08 62.0 42 71.4
PGSC0003DMG401026622 Solanum tuberosum HOM05D002179 ORTHO05D002232 5.8e-08 61.2 38 81.6
Nitab4.5_0005897g0030 Nicotiana tabacum HOM05D002179 ORTHO05D002232 1.7e-07 59.7 38 76.3
Peaxi162Scf00269g00059 Petunia axillaris HOM05D002179 ORTHO05D002232 1.7e-07 59.7 38 76.3
Sopen10g004540 Solanum pennellii HOM05D002179 ORTHO05D002232 2.9e-07 58.9 38 78.9
CAN.G168.4 Capsicum annuum HOM05D002179 ORTHO05D002232 3.8e-07 58.5 38 78.9
Solyc10g008770.3 Solanum lycopersicum HOM05D002179 ORTHO05D002232 8.4e-07 57.4 38 76.3
CSS0036133 Camellia sinensis var. sinensis HOM05D002179 ORTHO05D002232 1.4e-06 56.6 71 45.1
Dinv17391 Davidia involucrata HOM05D002179 ORTHO05D002232 3.2e-06 55.5 48 56.2
MSTRG.16138 Avicennia marina HOM05D002179 ORTHO05D002232 4.2e-06 55.1 38 68.4
Oeu045069.1 Olea europaea HOM05D002179 ORTHO05D002232 7.1e-06 54.3 38 68.4
Dinv04638 Davidia involucrata HOM05D002179 ORTHO05D002232 9.3e-06 53.9 71 45.1
Gorai.010G156400 Gossypium raimondii HOM05D002179 ORTHO05D002232 9.3e-06 53.9 71 42.3


User provided reference genes

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