Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G532.19 Capsicum annuum HOM05D002745 ORTHO05D002945 4.1e-116 421.4 209 100.0
CAN.G532.18 Capsicum annuum HOM05D002745 ORTHO05D002945 6.2e-40 168.3 216 46.3
Sopen08g029770 Solanum pennellii HOM05D002745 ORTHO05D002945 3.2e-36 156.0 221 42.5
Solyc08g081450.4 Solanum lycopersicum HOM05D002745 ORTHO05D002945 3.0e-34 149.4 221 40.7
PGSC0003DMG400012326 Solanum tuberosum HOM05D002745 ORTHO05D002945 1.3e-32 144.1 264 37.5
Sopen08g029780 Solanum pennellii HOM05D002745 ORTHO05D002945 3.7e-24 115.9 68 79.4
Peaxi162Scf00074g01837 Petunia axillaris HOM05D002745 ORTHO05D002945 6.2e-24 115.2 196 37.2
Nitab4.5_0002282g0070 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.8e-23 113.6 225 36.9
Nitab4.5_0005586g0050 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.0e-18 97.8 226 33.6
Nitab4.5_0000769g0180 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.3e-18 97.4 179 36.3
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 3.7e-16 89.4 68 58.8
Cc03_g15810 Coffea canephora HOM05D002745 ORTHO05D002945 1.8e-15 87.0 72 58.3
Cc08_g15110 Coffea canephora HOM05D002745 ORTHO05D002945 2.4e-15 86.7 72 59.7
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 3.1e-15 86.3 63 63.5
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 3.1e-15 86.3 84 45.2
arahy.Tifrunner.gnm1.ann1.IX2F7U Arachis hypogaea HOM05D002745 ORTHO05D002945 4.0e-15 85.9 64 51.6
arahy.Tifrunner.gnm1.ann1.TL04YN Arachis hypogaea HOM05D002745 ORTHO05D002945 5.3e-15 85.5 64 51.6
HanXRQChr13g0396511 Helianthus annuus HOM05D002745 ORTHO05D002945 5.3e-15 85.5 83 51.8
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 5.3e-15 85.5 65 53.8
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 1.2e-14 84.3 68 58.8
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 3.4e-14 82.8 68 52.9
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 3.4e-14 82.8 68 52.9
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 3.4e-14 82.8 68 52.9
Oeu031426.3 Olea europaea HOM05D002745 ORTHO05D002945 4.5e-14 82.4 73 53.4
Eucgr.E00647 Eucalyptus grandis HOM05D002745 ORTHO05D002945 5.8e-14 82.0 68 54.4
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 5.8e-14 82.0 68 55.9
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 1.0e-13 81.3 73 49.3
FAN04G0315 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.0e-13 81.3 73 49.3
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.0e-13 81.3 73 49.3
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 1.7e-13 80.5 68 51.5
COL.COLO4_03661 Corchorus olitorius HOM05D002745 ORTHO05D002945 1.7e-13 80.5 80 47.5
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 2.2e-13 80.1 69 55.1
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 2.2e-13 80.1 70 57.1
Potri.003G131500 Populus trichocarpa HOM05D002745 ORTHO05D002945 3.8e-13 79.3 64 53.1
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 5.0e-13 79.0 72 52.8
Sabra03G0093800 Salix brachista HOM05D002745 ORTHO05D002945 5.0e-13 79.0 68 51.5
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 6.5e-13 78.6 72 55.6
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 8.4e-13 78.2 68 52.9
FAN18G2249 Fragaria x ananassa HOM05D002745 ORTHO05D002945 8.4e-13 78.2 73 47.9
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 8.4e-13 78.2 68 51.5
THA.LOC104817848 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 8.4e-13 78.2 66 47.0
Glyma.01G221700 Glycine max HOM05D002745 ORTHO05D002945 1.4e-12 77.4 68 50.0
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 1.9e-12 77.0 68 51.5
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 3.2e-12 76.3 66 45.5
Lalb_Chr09g0320851 Lupinus albus HOM05D002745 ORTHO05D002945 3.2e-12 76.3 68 42.6
AUR62019734 Chenopodium quinoa HOM05D002745 ORTHO05D002945 4.2e-12 75.9 68 50.0
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 4.2e-12 75.9 77 40.3
Ah.07g196580 Amaranthus hybridus HOM05D002745 ORTHO05D002945 5.5e-12 75.5 68 51.5
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 5.5e-12 75.5 66 45.5
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 9.3e-12 74.7 63 52.4
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
BcaC08g44532 Brassica carinata HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
A07p20770 Brassica napus HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
C06p19920 Brassica napus HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
BolC6t37179H Brassica oleracea HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
BraA07t29769Z Brassica rapa HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 45.5
Hma1.2p1_0216F.1_g090940 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 9.3e-12 74.7 141 36.2
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 9.3e-12 74.7 66 42.4
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 1.2e-11 74.3 66 51.5
BcaB02g07891 Brassica carinata HOM05D002745 ORTHO05D002945 2.1e-11 73.6 66 47.0
Thhalv10028091m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 2.1e-11 73.6 66 43.9
Solyc12g056190.2 Solanum lycopersicum HOM05D002745 ORTHO05D002945 2.1e-11 73.6 60 60.0
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 2.7e-11 73.2 90 38.9
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.5e-11 72.8 66 50.0
Sopen12g028700 Solanum pennellii HOM05D002745 ORTHO05D002945 3.5e-11 72.8 60 58.3
CANSAT21G1564 Cannabis sativa HOM05D002745 ORTHO05D002945 4.6e-11 72.4 68 45.6
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 1.0e-10 71.2 45 62.2
Phvul.002G159200 Phaseolus vulgaris HOM05D002745 ORTHO05D002945 1.3e-10 70.9 68 45.6
EL10Ac5g12821 Beta vulgaris HOM05D002745 ORTHO05D002945 3.0e-10 69.7 68 47.1
PSO063G0080 Papaver somniferum HOM05D002745 ORTHO05D002945 3.0e-10 69.7 66 45.5
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 3.9e-10 69.3 43 69.8
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 8.7e-10 68.2 68 45.6
MBI04_g39574_MAGBIO Magnolia biondii HOM05D002745 ORTHO05D002945 1.9e-09 67.0 41 63.4
PSO832G1614 Papaver somniferum HOM05D002745 ORTHO05D002945 1.9e-09 67.0 66 43.9
FAN13G2577 Fragaria x ananassa HOM05D002745 ORTHO05D002945 4.3e-09 65.9 76 40.8
Thecc.08G146300 Theobroma cacao HOM05D002745 ORTHO05D002945 1.3e-08 64.3 66 42.4
LjContig00312_ERROPOS870357g0020900 Lotus japonicus HOM05D002745 ORTHO05D002945 3.7e-08 62.8 45 48.9
Nitab4.5_0000947g0080 Nicotiana tabacum HOM05D002745 ORTHO05D002945 8.2e-08 61.6 63 49.2
Zm00001eb065330 Zea mays HOM05D002745 ORTHO05D002945 8.2e-08 61.6 66 43.9
SalBow8G0983 Salvia bowleyana HOM05D002745 ORTHO05D002945 1.4e-07 60.8 140 35.0
HPP92_028537 Vanilla planifolia HOM05D002745 ORTHO05D002945 1.8e-07 60.5 73 34.2
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 3.1e-07 59.7 68 45.6
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 4.1e-07 59.3 59 42.4
SGA_v2.0_scaffold144G35908 Striga asiatica HOM05D002745 ORTHO05D002945 2.0e-06 57.0 146 32.2
Prupe.8G022100 Prunus persica HOM05D002745 ORTHO05D002945 2.6e-06 56.6 67 35.8
Cfa018348 Carpinus fangiana HOM05D002745 ORTHO05D002945 1.0e-05 54.7 65 38.5
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 1.0e-05 54.7 44 52.3


User provided reference genes

Program Settings