Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.4e-31 138.3 72 100.0
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 2.5e-25 118.2 62 100.0
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.3e-21 105.9 63 92.1
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 1.3e-21 105.9 63 90.5
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.2e-21 105.1 63 88.9
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 2.9e-21 104.8 63 88.9
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.5e-20 101.7 63 87.3
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 4.2e-20 100.9 63 87.3
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.6e-19 99.0 63 84.1
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 6.1e-19 97.1 64 85.9
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 2.8e-16 88.2 54 85.2
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 4.8e-16 87.4 54 83.3
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 6.3e-16 87.0 53 86.8
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 8.2e-16 86.7 56 76.8
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.1e-15 86.3 52 84.6
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.4e-15 85.9 54 81.5
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.4e-15 85.9 53 83.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.4e-15 85.9 57 75.4
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.4e-15 85.9 55 83.6
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.8e-15 85.5 58 79.3
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.8e-15 85.5 59 76.3
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.8e-15 85.5 54 83.3
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.8e-15 85.5 53 83.0
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 1.8e-15 85.5 55 80.0
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.8e-15 85.5 52 84.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.1e-15 84.7 53 81.1
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.1e-15 84.7 61 73.8
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 4.1e-15 84.3 52 84.6
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 4.1e-15 84.3 55 80.0
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 5.3e-15 84.0 51 86.3
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 5.3e-15 84.0 54 79.6
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 6.9e-15 83.6 56 75.0
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 6.9e-15 83.6 56 75.0
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 6.9e-15 83.6 56 75.0
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 6.9e-15 83.6 55 78.2
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 9.0e-15 83.2 55 74.5
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.2e-14 82.8 58 77.6
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.2e-14 82.8 56 75.0
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.2e-14 82.8 52 82.7
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.2e-14 82.8 52 82.7
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.2e-14 82.8 52 84.6
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.5e-14 82.4 55 78.2
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.5e-14 82.4 53 83.0
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.0e-14 82.0 52 82.7
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.0e-14 82.0 56 75.0
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-14 82.0 56 75.0
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.0e-14 82.0 56 75.0
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.0e-14 82.0 58 75.9
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.0e-14 82.0 58 75.9
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 2.0e-14 82.0 52 80.8
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.0e-14 82.0 58 74.1
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.0e-14 82.0 58 72.4
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 2.6e-14 81.6 56 73.2
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.6e-14 81.6 52 80.8
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 2.6e-14 81.6 54 77.8
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 3.4e-14 81.3 60 76.7
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.4e-14 81.3 55 78.2
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 3.4e-14 81.3 56 73.2
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 3.4e-14 81.3 53 75.5
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 4.5e-14 80.9 56 73.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 4.5e-14 80.9 53 81.1
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.5e-14 80.9 52 80.8
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 4.5e-14 80.9 58 70.7
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 4.5e-14 80.9 55 76.4
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 5.9e-14 80.5 52 80.8
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 5.9e-14 80.5 53 81.1
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 5.9e-14 80.5 54 77.8
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.9e-14 80.5 53 81.1
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 7.7e-14 80.1 52 78.8
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 7.7e-14 80.1 60 68.3
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 7.7e-14 80.1 52 78.8
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.7e-14 80.1 55 76.4
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 7.7e-14 80.1 55 76.4
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.0e-13 79.7 52 80.8
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.0e-13 79.7 52 76.9
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.0e-13 79.7 51 84.3
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.3e-13 79.3 52 76.9
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.3e-13 79.3 53 81.1
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.7e-13 79.0 52 76.9
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.7e-13 79.0 63 71.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.7e-13 79.0 54 74.1
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.7e-13 79.0 52 76.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.7e-13 79.0 63 68.3
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.7e-13 79.0 55 72.7
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 2.2e-13 78.6 57 68.4
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 2.2e-13 78.6 56 73.2
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 2.2e-13 78.6 56 73.2
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 2.2e-13 78.6 54 74.1
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 2.9e-13 78.2 54 74.1
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 3.8e-13 77.8 54 77.8
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 5.0e-13 77.4 53 83.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 5.0e-13 77.4 59 69.5
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.0e-13 77.4 62 66.1
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 5.0e-13 77.4 52 73.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 6.5e-13 77.0 64 70.3
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 8.5e-13 76.6 52 80.8
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 8.5e-13 76.6 52 80.8
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 8.5e-13 76.6 52 80.8
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 1.1e-12 76.3 54 72.2
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.1e-12 76.3 51 78.4
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.4e-12 75.9 50 78.0
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.9e-12 75.5 52 73.1
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.9e-12 75.5 62 67.7
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 2.5e-12 75.1 52 75.0
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 3.2e-12 74.7 54 68.5
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 3.2e-12 74.7 61 65.6
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 3.2e-12 74.7 52 76.9
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 4.2e-12 74.3 52 78.8
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 4.2e-12 74.3 64 65.6
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 4.2e-12 74.3 54 70.4
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 5.5e-12 73.9 50 74.0
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 9.4e-12 73.2 57 66.7
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 9.4e-12 73.2 63 66.7
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 9.4e-12 73.2 63 66.7
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 9.4e-12 73.2 54 66.7
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.2e-11 72.8 56 69.6
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 1.2e-11 72.8 51 76.5
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 2.1e-11 72.0 55 70.9
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.7e-11 71.6 52 71.2
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 2.7e-11 71.6 52 73.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 4.6e-11 70.9 57 64.9
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 6.1e-11 70.5 52 75.0
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 6.1e-11 70.5 52 75.0
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 6.1e-11 70.5 62 61.3
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 7.9e-11 70.1 52 71.2
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 3.9e-10 67.8 56 66.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.9e-10 67.8 59 64.4
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 3.9e-10 67.8 49 69.4
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.8e-10 66.6 52 67.3
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.8e-10 66.6 52 67.3
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 7.4e-09 63.5 54 57.4
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.3e-08 62.8 54 55.6
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 2.8e-08 61.6 41 75.6
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 3.7e-08 61.2 56 62.5
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 8.2e-08 60.1 63 57.1
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.4e-07 59.3 51 64.7
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.8e-07 58.9 53 58.5
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.3e-07 57.4 67 52.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 7.7e-06 53.5 53 54.7


User provided reference genes

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