Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 5.8e-91 337.4 158 100.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 7.7e-75 283.9 158 82.3
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 3.6e-64 248.4 151 72.8
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 6.1e-64 247.7 151 72.2
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 7.9e-64 247.3 153 70.6
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 6.7e-63 244.2 150 74.0
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 7.4e-62 240.7 151 69.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.4e-62 240.7 151 70.9
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 1.7e-61 239.6 150 73.3
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 6.3e-61 237.7 150 69.3
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 6.3e-61 237.7 150 68.7
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 6.3e-61 237.7 153 69.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.1e-60 236.9 150 68.7
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.1e-60 236.9 153 66.7
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.1e-60 236.9 151 68.2
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.8e-60 236.1 150 70.0
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 2.6e-59 232.3 153 66.7
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.0e-58 230.3 148 66.9
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.0e-58 230.3 152 64.5
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.9e-58 228.8 150 68.0
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 5.0e-58 228.0 150 65.3
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 6.5e-58 227.6 152 63.2
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 7.2e-57 224.2 150 63.3
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 4.7e-56 221.5 150 64.0
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.8e-55 219.5 155 61.3
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 2.3e-55 219.2 150 63.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 5.2e-55 218.0 152 61.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 8.8e-55 217.2 150 62.7
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.5e-54 216.5 150 62.0
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.0e-54 216.1 150 62.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 3.3e-54 215.3 154 59.1
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 3.3e-54 215.3 150 63.3
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 4.4e-54 214.9 149 63.1
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 5.7e-54 214.5 112 83.9
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 7.5e-54 214.2 150 62.7
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 7.5e-54 214.2 150 62.7
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 4.8e-53 211.5 150 61.3
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.8e-53 211.5 144 62.5
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 3.1e-52 208.8 149 63.1
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 3.1e-52 208.8 150 60.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 3.1e-52 208.8 153 58.2
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 4.1e-52 208.4 155 60.6
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 7.7e-51 204.1 152 59.9
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 1.0e-50 203.8 150 59.3
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.3e-50 203.4 151 59.6
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.3e-50 203.4 152 59.9
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 5.0e-50 201.4 152 60.5
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.1e-49 200.3 151 57.0
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.1e-49 200.3 152 59.9
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.5e-49 199.9 153 56.2
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.5e-49 199.9 153 56.2
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.9e-49 199.5 150 56.7
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.9e-49 199.5 149 57.7
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.9e-49 199.5 151 60.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.2e-49 198.7 152 59.2
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 3.2e-49 198.7 151 57.6
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 5.5e-49 198.0 150 57.3
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 7.2e-49 197.6 154 55.8
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 9.4e-49 197.2 151 59.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.2e-48 196.8 152 58.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.2e-48 196.8 152 57.9
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.6e-48 196.4 152 58.6
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.0e-47 193.7 138 63.0
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.8e-47 193.0 151 58.3
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 5.2e-47 191.4 149 58.4
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 2.0e-46 189.5 151 57.0
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 3.4e-46 188.7 150 56.7
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 4.4e-46 188.3 151 55.0
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.2e-45 186.0 149 55.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 2.8e-45 185.7 151 57.0
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 6.3e-45 184.5 151 55.0
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.5e-43 178.7 151 52.3
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 6.5e-42 174.5 151 52.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.1e-41 173.7 127 59.8
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 9.5e-41 170.6 153 52.9
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 3.4e-38 162.2 122 59.0
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 3.5e-35 152.1 158 47.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.2e-32 143.7 122 52.5
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.7e-29 132.1 100 60.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 3.3e-25 119.0 146 41.1
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 8.9e-23 110.9 101 56.4
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.2e-19 100.5 126 41.3
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 3.5e-19 99.0 151 37.1
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.8e-15 86.7 52 71.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 5.2e-15 85.1 63 57.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 6.8e-15 84.7 63 58.7
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 6.2e-08 61.6 84 38.1


User provided reference genes

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