Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 6.7e-171 604.4 412 100.0
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.2e-114 417.5 418 80.6
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.7e-113 412.5 410 80.7
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.8e-112 410.2 410 80.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.9e-107 391.3 425 70.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.5e-101 374.0 427 65.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.0e-74 283.9 333 57.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 3.8e-73 279.6 327 58.7
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 3.3e-61 240.0 337 52.2
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.8e-58 229.2 340 49.4
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 6.7e-54 215.7 339 49.0
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 4.3e-53 213.0 338 49.1
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.4e-53 212.2 364 41.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.0e-50 204.1 330 49.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.9e-48 197.6 341 46.3
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.9e-48 197.6 339 48.1
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.6e-47 194.5 320 41.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.9e-46 189.9 345 46.7
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 6.7e-46 189.1 334 47.0
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-45 188.3 332 42.2
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.9e-45 187.6 335 46.9
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.8e-44 183.0 327 47.4
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 8.2e-44 182.2 342 46.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.8e-43 181.0 325 46.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.1e-43 179.9 339 46.0
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 9.0e-43 178.7 333 45.3
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.6e-42 177.2 341 45.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 5.9e-42 176.0 364 44.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.7e-41 174.5 333 46.8
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 8.5e-41 172.2 343 42.9
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.4e-40 171.4 335 44.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.1e-39 167.5 336 43.2
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 3.6e-39 166.8 321 44.2
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 7.9e-39 165.6 331 45.3
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.4e-38 164.9 327 44.6
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 8.8e-38 162.2 327 46.2
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.3e-37 159.8 327 36.1
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 9.7e-37 158.7 324 43.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.3e-36 158.3 229 46.7
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.3e-36 158.3 321 44.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.3e-36 158.3 324 45.4
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 2.8e-36 157.1 322 43.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.1e-35 155.2 332 42.5
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 6.9e-35 152.5 272 46.3
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 6.9e-35 152.5 334 44.0
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.4e-34 150.2 330 34.8
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.5e-34 149.8 326 39.9
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.3e-33 148.3 321 43.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.5e-32 144.1 340 37.4
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.2e-32 143.7 316 43.4
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 3.2e-32 143.7 330 41.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 3.2e-32 143.7 341 37.2
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.2e-31 141.7 333 43.8
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 2.1e-31 141.0 337 38.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.6e-31 140.2 192 43.8
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 4.7e-31 139.8 329 39.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.0e-30 138.7 335 38.5
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.0e-30 137.1 334 41.6
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.1e-29 135.2 332 41.6
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.6e-29 134.0 333 42.0
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 2.2e-28 131.0 328 40.5
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.8e-28 130.6 314 39.8
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.8e-28 129.8 333 38.4
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 4.8e-28 129.8 339 41.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 6.3e-28 129.4 322 41.6
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.1e-27 128.6 225 46.2
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.8e-27 127.9 330 33.3
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.1e-27 127.1 329 36.8
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 4.1e-27 126.7 337 38.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 7.0e-27 125.9 335 37.0
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 9.1e-27 125.6 335 37.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.2e-26 125.2 325 36.0
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.2e-26 125.2 326 38.3
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 1.6e-26 124.8 334 37.1
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 5.0e-25 119.8 331 31.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.0e-25 119.8 332 40.7
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 4.2e-24 116.7 190 40.0
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 1.2e-23 115.2 320 38.4
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.6e-23 114.8 179 40.2
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 4.7e-23 113.2 331 29.9
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 6.7e-22 109.4 320 36.2
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 6.7e-22 109.4 300 38.3
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 2.8e-20 104.0 82 57.3
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 4.8e-20 103.2 220 34.5
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 7.0e-19 99.4 206 36.4
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 2.0e-18 97.8 200 36.5
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 4.5e-18 96.7 326 35.3
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 5.9e-18 96.3 206 44.7
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.3e-17 95.1 199 36.7
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.3e-17 95.1 213 35.7
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.9e-17 94.0 202 38.1
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.9e-17 94.0 337 28.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.9e-16 91.3 325 28.9
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.9e-16 91.3 121 45.5
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.6e-15 88.2 187 34.8
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.6e-15 88.2 334 35.6
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.7e-15 87.4 335 35.8
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.6e-15 87.0 190 35.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 3.6e-15 87.0 327 28.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.0e-14 85.5 92 44.6
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.0e-14 84.0 177 46.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 3.0e-14 84.0 315 37.5
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.2e-13 82.0 266 30.1
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.5e-13 81.6 310 27.7
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 5.7e-13 79.7 129 39.5
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 7.5e-13 79.3 103 42.7
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 6.3e-12 76.3 159 35.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.1e-11 75.5 127 42.5
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.4e-11 75.1 113 38.1
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 2.4e-11 74.3 178 33.1
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 3.1e-11 73.9 336 32.7
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.6e-10 71.6 99 43.4
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 2.0e-10 71.2 95 40.0
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 7.7e-10 69.3 97 38.1
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.3e-09 68.6 68 47.1
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 2.9e-09 67.4 103 36.9
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 5.0e-09 66.6 112 40.2
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 6.5e-09 66.2 125 36.0
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 8.5e-09 65.9 81 48.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.5e-09 65.9 135 39.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-08 65.1 101 43.6
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 3.2e-08 63.9 125 35.2
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 7.2e-08 62.8 73 43.8
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 9.5e-08 62.4 62 45.2
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 2.1e-07 61.2 76 36.8
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 2.1e-07 61.2 46 56.5
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 2.1e-07 61.2 88 40.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.7e-07 60.1 102 41.2
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 4.7e-07 60.1 160 31.2
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.1e-07 59.7 43 60.5
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 8.0e-07 59.3 92 42.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 8.0e-07 59.3 87 42.5
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 8.0e-07 59.3 125 33.6
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.0e-06 58.9 73 35.6
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 1.0e-06 58.9 107 36.4
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.4e-06 58.5 99 41.4
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 4.0e-06 57.0 93 33.3
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 5.2e-06 56.6 113 39.8
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 6.8e-06 56.2 78 42.3
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 6.8e-06 56.2 127 35.4
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 6.8e-06 56.2 92 39.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 8.8e-06 55.8 92 41.3
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 8.8e-06 55.8 76 43.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 8.8e-06 55.8 116 34.5
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 8.8e-06 55.8 93 37.6
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 8.8e-06 55.8 78 44.9
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 8.8e-06 55.8 116 33.6
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 8.8e-06 55.8 47 57.4


User provided reference genes

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