Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G52.5 Capsicum annuum HOM05D000843 ORTHO05D013550 3.1e-37 157.9 78 100.0
CAN.G45.9 Capsicum annuum HOM05D000843 ORTHO05D013550 6.1e-33 143.7 78 89.7
CAN.G363.20 Capsicum annuum HOM05D000843 ORTHO05D013550 8.3e-30 133.3 78 84.6
CAN.G177.20 Capsicum annuum HOM05D000011 ORTHO05D009225 7.0e-29 130.2 71 87.3
CAN.G613.3 Capsicum annuum HOM05D000843 ORTHO05D013550 1.0e-27 126.3 77 84.4
CAN.G1074.10 Capsicum annuum HOM05D000843 ORTHO05D013550 2.9e-19 98.2 72 76.4
CAN.G156.13 Capsicum annuum HOM05D000843 ORTHO05D013550 3.3e-18 94.7 51 88.2
CAN.G65.222 Capsicum annuum HOM05D000843 ORTHO05D000698 9.5e-18 93.2 53 88.7
Solyc06g073720.3 Solanum lycopersicum HOM05D000843 ORTHO05D000698 5.7e-15 84.0 54 81.5
Sopen06g030120 Solanum pennellii HOM05D000843 ORTHO05D000698 5.7e-15 84.0 54 81.5
PGSC0003DMG400005915 Solanum tuberosum HOM05D000843 ORTHO05D000698 1.3e-14 82.8 48 85.4
Nitab4.5_0002184g0030 Nicotiana tabacum HOM05D000843 ORTHO05D000698 1.7e-14 82.4 53 77.4
Solyc06g073730.2 Solanum lycopersicum HOM05D000843 ORTHO05D000698 2.4e-13 78.6 53 77.4
Nitab4.5_0000271g0040 Nicotiana tabacum HOM05D000843 ORTHO05D000698 3.2e-13 78.2 53 71.7
Nitab4.5_0002184g0010 Nicotiana tabacum HOM05D000843 ORTHO05D000698 5.4e-13 77.4 53 69.8
Nitab4.5_0000271g0090 Nicotiana tabacum HOM05D000843 ORTHO05D000698 7.0e-13 77.0 53 75.5
Nitab4.5_0000271g0110 Nicotiana tabacum HOM05D000843 ORTHO05D000698 9.2e-13 76.6 53 73.6
Sopen06g030130 Solanum pennellii HOM05D000843 ORTHO05D000698 2.0e-12 75.5 53 75.5
CAN.G864.1 Capsicum annuum HOM05D000843 ORTHO05D000698 2.7e-12 75.1 53 67.9
Peaxi162Scf00342g00073 Petunia axillaris HOM05D000843 ORTHO05D000698 5.9e-12 73.9 51 70.6
Nitab4.5_0007649g0020 Nicotiana tabacum HOM05D000843 ORTHO05D000698 1.0e-11 73.2 51 74.5
Nitab4.5_0000428g0210 Nicotiana tabacum HOM05D000843 ORTHO05D000698 1.3e-11 72.8 51 68.6
Peaxi162Scf00526g00042 Petunia axillaris HOM05D000843 ORTHO05D000698 2.3e-11 72.0 52 73.1
CAN.G65.223 Capsicum annuum HOM05D000843 ORTHO05D000698 3.9e-11 71.2 53 67.9
PGSC0003DMG400008712 Solanum tuberosum HOM05D000843 ORTHO05D000698 5.0e-11 70.9 53 69.8
Actinidia22477 Actinidia chinensis HOM05D000843 ORTHO05D000698 8.6e-11 70.1 53 71.7
Cc01_g07490 Coffea canephora HOM05D000843 ORTHO05D000698 1.5e-10 69.3 53 64.2
Dinv25741 Davidia involucrata HOM05D000843 ORTHO05D000698 1.9e-10 68.9 53 66.0
Sopen01g004640 Solanum pennellii HOM05D000843 ORTHO05D000698 2.5e-10 68.6 53 67.9
Potri.009G159200 Populus trichocarpa HOM05D000843 ORTHO05D000698 4.3e-10 67.8 53 67.9
PGSC0003DMG400005914 Solanum tuberosum HOM05D000843 ORTHO05D000698 5.6e-10 67.4 47 74.5
Gohir.A08G196600 Gossypium hirsutum HOM05D000843 ORTHO05D000698 1.2e-09 66.2 53 62.3
Gohir.D08G213800 Gossypium hirsutum HOM05D000843 ORTHO05D000698 1.2e-09 66.2 53 62.3
Gohir.D12G083502 Gossypium hirsutum HOM05D000843 ORTHO05D013550 1.2e-09 66.2 53 62.3
Gorai.001G192700 Gossypium raimondii HOM05D000843 ORTHO05D013550 1.2e-09 66.2 53 62.3
Gorai.004G227800 Gossypium raimondii HOM05D000843 ORTHO05D000698 1.2e-09 66.2 53 62.3
Solyc01g009170.4 Solanum lycopersicum HOM05D000843 ORTHO05D000698 1.2e-09 66.2 53 66.0
Actinidia22476 Actinidia chinensis HOM05D000843 ORTHO05D000698 2.1e-09 65.5 53 66.0
Thecc.09G338000 Theobroma cacao HOM05D000843 ORTHO05D000698 2.1e-09 65.5 53 62.3
Gohir.D07G172550 Gossypium hirsutum HOM05D000843 ORTHO05D013550 3.6e-09 64.7 53 60.4
Dinv10728 Davidia involucrata HOM05D000843 ORTHO05D000698 4.7e-09 64.3 53 64.2
Duzib168G1232 Durio zibethinus HOM05D000843 ORTHO05D000698 4.7e-09 64.3 53 60.4
Glyma.20G051500 Glycine max HOM05D000843 ORTHO05D000698 6.2e-09 63.9 53 60.4
Sabra09G0124500 Salix brachista HOM05D000843 ORTHO05D000698 8.0e-09 63.5 53 64.2
Oeu022225.1 Olea europaea HOM05D000843 ORTHO05D000698 1.0e-08 63.2 54 64.8
CSS0042368 Camellia sinensis var. sinensis HOM05D000843 ORTHO05D000698 1.4e-08 62.8 53 66.0
Medtr5g087790 Medicago truncatula HOM05D000843 ORTHO05D000698 1.4e-08 62.8 53 60.4
Duzib150G0618 Durio zibethinus HOM05D000843 ORTHO05D000698 2.3e-08 62.0 53 56.6
Potri.004G197400 Populus trichocarpa HOM05D000843 ORTHO05D000698 2.3e-08 62.0 53 62.3
Rhsim01G0196400 Rhododendron simsii HOM05D000843 ORTHO05D000698 2.3e-08 62.0 53 62.3
Glyma.13G076700 Glycine max HOM05D000843 ORTHO05D000698 3.1e-08 61.6 53 58.5
Eucgr.J00631 Eucalyptus grandis HOM05D000843 ORTHO05D000698 4.0e-08 61.2 53 66.0
Sabra04G0133800 Salix brachista HOM05D000843 ORTHO05D000698 4.0e-08 61.2 53 60.4
arahy.Tifrunner.gnm1.ann1.J729H0 Arachis hypogaea HOM05D000843 ORTHO05D000698 5.2e-08 60.8 53 62.3
arahy.Tifrunner.gnm1.ann1.S7XF8N Arachis hypogaea HOM05D000843 ORTHO05D000698 5.2e-08 60.8 53 62.3
Hma1.2p1_0218F.1_g092710 Hydrangea macrophylla HOM05D000843 ORTHO05D000698 5.2e-08 60.8 53 60.4
SalBow6G1804 Salvia bowleyana HOM05D000843 ORTHO05D000698 5.2e-08 60.8 54 57.4
Manes.04G052000 Manihot esculenta HOM05D000843 ORTHO05D000698 6.8e-08 60.5 53 62.3
Phvul.008G207000 Phaseolus vulgaris HOM05D000843 ORTHO05D000698 6.8e-08 60.5 53 56.6
Psat2g022320 Pisum sativum HOM05D000843 ORTHO05D000698 6.8e-08 60.5 53 56.6
TPR.G22218 Trifolium pratense HOM05D000843 ORTHO05D000698 6.8e-08 60.5 53 56.6
Gorai.013G266300 Gossypium raimondii HOM05D000843 ORTHO05D000698 1.2e-07 59.7 53 60.4
MSTRG.17663 Avicennia marina HOM05D000843 ORTHO05D000698 1.5e-07 59.3 53 58.5
Cpa.g.sc103.60 Carica papaya HOM05D000843 ORTHO05D000698 1.5e-07 59.3 53 56.6
Gohir.A05G101500 Gossypium hirsutum HOM05D000843 ORTHO05D000698 1.5e-07 59.3 53 54.7
Oeu026661.1 Olea europaea HOM05D000843 ORTHO05D000698 2.0e-07 58.9 53 54.7
Ciclev10014617m.g Citrus clementina HOM05D000843 ORTHO05D000698 2.6e-07 58.5 53 56.6
Gohir.D03G133500 Gossypium hirsutum HOM05D000843 ORTHO05D000698 2.6e-07 58.5 54 53.7
Gorai.003G140600 Gossypium raimondii HOM05D000843 ORTHO05D000698 2.6e-07 58.5 54 53.7
Oeu048808.1 Olea europaea HOM05D000843 ORTHO05D000698 2.6e-07 58.5 54 55.6
BcaC05g28283 Brassica carinata HOM05D000843 ORTHO05D000698 3.4e-07 58.2 52 55.8
C05p43310 Brassica napus HOM05D000843 ORTHO05D000698 3.4e-07 58.2 52 55.8
BolC5t33063H Brassica oleracea HOM05D000843 ORTHO05D000698 3.4e-07 58.2 52 55.8
ClCG03G014100 Citrullus lanatus HOM05D000843 ORTHO05D000698 3.4e-07 58.2 53 60.4
Glyma.02G274600 Glycine max HOM05D000843 ORTHO05D000698 3.4e-07 58.2 53 56.6
LjContig00564g0001972 Lotus japonicus HOM05D000843 ORTHO05D000698 3.4e-07 58.2 53 56.6
Sed0007953 Sechium edule HOM05D000843 ORTHO05D000698 3.4e-07 58.2 53 58.5
THA.LOC104826471 Tarenaya hassleriana HOM05D000843 ORTHO05D000698 3.4e-07 58.2 53 54.7
Ca_06157_v3 Cicer arietinum L. HOM05D000843 ORTHO05D000698 4.4e-07 57.8 53 52.8
Ca_29849_v3 Cicer arietinum L. HOM05D000843 ORTHO05D000698 4.4e-07 57.8 53 52.8
Glyma.14G041500 Glycine max HOM05D000843 ORTHO05D000698 5.8e-07 57.4 53 56.6
Oeu032078.1 Olea europaea HOM05D000843 ORTHO05D000698 5.8e-07 57.4 54 55.6
PGR119G0809 Punica granatum HOM05D000843 ORTHO05D000698 5.8e-07 57.4 55 54.5
CiPaw.13G120900 Carya illinoinensis HOM05D000843 ORTHO05D000698 7.5e-07 57.0 53 50.9
Lj2C931T8 Lonicera japonica HOM05D000843 ORTHO05D000698 7.5e-07 57.0 54 61.1
FvH4_7g04940 Fragaria vesca HOM05D000843 ORTHO05D000698 9.8e-07 56.6 53 58.5
FAN01G0235 Fragaria x ananassa HOM05D000843 ORTHO05D000698 9.8e-07 56.6 53 58.5
MD02G1266200 Malus domestica HOM05D000843 ORTHO05D000698 9.8e-07 56.6 53 58.5
Duzib170G0752 Durio zibethinus HOM05D000843 ORTHO05D000698 1.3e-06 56.2 53 52.8
A05p28010 Brassica napus HOM05D000843 ORTHO05D000698 1.7e-06 55.8 52 53.8
BraA05t21684Z Brassica rapa HOM05D000843 ORTHO05D000698 1.7e-06 55.8 52 53.8
MELO3C015633.2 Cucumis melo HOM05D000843 ORTHO05D000698 2.2e-06 55.5 53 56.6
MD07G1053800 Malus domestica HOM05D000843 ORTHO05D000698 2.2e-06 55.5 53 56.6
CsaV3_1G042150 Cucumis sativus L. HOM05D000843 ORTHO05D000698 2.9e-06 55.1 53 56.6
Potri.008G011300 Populus trichocarpa HOM05D000843 ORTHO05D000698 2.9e-06 55.1 53 52.8
Aa31LG8G7530 Aethionema arabicum HOM05D000843 ORTHO05D000698 3.7e-06 54.7 53 54.7
FvH4_7g04852 Fragaria vesca HOM05D000843 ORTHO05D000698 3.7e-06 54.7 53 54.7
Atru.chr3.2880 Acer truncatum HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 50.9
MSTRG.18487 Avicennia marina HOM05D000843 ORTHO05D000698 4.9e-06 54.3 54 55.6
BcaB06g26147 Brassica carinata HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 56.6
Thhalv10020292m.g Eutrema salsugineum HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 52.8
FAN03G0370 Fragaria x ananassa HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 54.7
Potri.010G247500 Populus trichocarpa HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 52.8
Sp3g18790 Schrenkiella parvula HOM05D000843 ORTHO05D000698 4.9e-06 54.3 53 52.8
AT3G20770 Arabidopsis thaliana HOM05D000843 ORTHO05D000698 6.4e-06 53.9 53 52.8
Gohir.A03G034800 Gossypium hirsutum HOM05D000843 ORTHO05D000698 6.4e-06 53.9 54 53.7
TAR369G0943 Trochodendron aralioides HOM05D000843 ORTHO05D000698 6.4e-06 53.9 53 54.7
FAN06G3294 Fragaria x ananassa HOM05D000843 ORTHO05D013550 8.3e-06 53.5 53 52.8
Gohir.D05G101300 Gossypium hirsutum HOM05D000843 ORTHO05D000698 8.3e-06 53.5 52 50.0
Gorai.009G105400 Gossypium raimondii HOM05D000843 ORTHO05D000698 8.3e-06 53.5 52 50.0
Prupe.2G058500 Prunus persica HOM05D000843 ORTHO05D000698 8.3e-06 53.5 53 50.9
SalBow3G0451 Salvia bowleyana HOM05D000843 ORTHO05D000698 8.3e-06 53.5 54 59.3


User provided reference genes

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