Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 0.0e+00 1445.6 767 100.0
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 8.3e-284 980.3 815 72.8
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.1e-275 953.4 787 72.9
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.0e-273 946.8 834 68.8
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.4e-270 936.4 787 71.8
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 6.0e-266 921.0 834 67.4
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 2.5e-240 835.9 790 65.2
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 2.1e-138 497.3 773 45.1
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 2.3e-124 450.7 568 49.8
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 6.9e-121 439.1 786 42.4
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 9.0e-121 438.7 775 42.5
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.3e-119 434.9 611 47.1
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.5e-115 421.4 815 40.0
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 4.3e-115 419.9 803 41.2
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 5.3e-113 412.9 791 41.1
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 6.9e-113 412.5 789 41.7
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 9.1e-113 412.1 808 39.9
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 4.5e-112 409.8 829 39.7
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 9.4e-110 402.1 806 39.7
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.1e-109 401.0 725 41.0
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 6.1e-109 399.4 741 40.9
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 8.8e-108 395.6 568 47.0
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 1.7e-106 391.3 819 39.6
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 2.4e-105 387.5 760 39.7
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 1.0e-103 382.1 816 38.5
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.3e-103 381.7 765 39.6
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.3e-103 381.7 659 42.3
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 5.0e-103 379.8 812 37.4
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 3.2e-102 377.1 623 42.5
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 3.6e-101 373.6 754 40.6
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 3.0e-100 370.5 572 44.1
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 2.2e-98 364.4 583 42.0
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 2.8e-98 364.0 812 37.6
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.8e-98 364.0 639 41.2
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 3.7e-98 363.6 577 42.1
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.6e-96 358.2 652 39.7
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.7e-95 354.8 828 35.7
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 2.2e-95 354.4 547 43.3
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 6.1e-93 346.3 629 39.6
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.0e-92 345.5 588 41.5
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.4e-92 345.1 658 39.8
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 3.0e-92 344.0 495 46.9
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 4.0e-92 343.6 768 38.4
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 5.2e-92 343.2 647 40.3
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 3.7e-90 337.0 823 35.8
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.8e-89 334.7 732 38.1
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.4e-89 334.3 729 38.4
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 4.1e-89 333.6 619 41.5
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 5.3e-89 333.2 663 37.7
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 1.7e-87 328.2 769 36.9
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.2e-87 327.8 778 36.9
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 8.5e-87 325.9 573 43.1
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 5.5e-86 323.2 559 42.6
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 7.2e-86 322.8 642 39.3
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 1.2e-85 322.0 583 41.9
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 4.7e-85 320.1 699 37.5
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.0e-84 317.4 603 40.6
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 3.4e-83 313.9 811 35.8
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.1e-81 308.9 606 39.1
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.4e-81 308.5 811 35.4
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.8e-81 308.1 804 36.1
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 2.4e-81 307.8 785 35.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.2e-80 305.4 584 41.3
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 4.5e-80 303.5 762 34.1
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 2.9e-79 300.8 598 39.6
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 4.2e-78 297.0 599 38.6
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.8e-76 291.6 560 39.6
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 3.0e-76 290.8 538 41.3
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 9.8e-75 285.8 645 37.2
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 8.3e-74 282.7 555 39.1
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 8.3e-74 282.7 555 39.1
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 9.2e-73 279.3 288 55.2
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 2.7e-72 277.7 552 39.3
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 4.5e-72 276.9 581 39.8
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 7.8e-72 276.2 597 38.4
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.0e-71 275.8 543 39.2
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 2.9e-71 274.2 774 34.4
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.5e-70 271.2 578 38.8
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 4.3e-62 243.8 422 41.2
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 4.7e-61 240.4 690 33.9
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 8.0e-61 239.6 718 32.2
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 6.0e-56 223.4 587 34.1
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 1.0e-55 222.6 780 31.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.0e-55 221.1 420 37.4
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 8.6e-55 219.5 611 33.9
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 1.5e-54 218.8 595 34.3
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 5.6e-54 216.9 612 33.3
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.6e-53 215.3 693 31.6
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.6e-53 215.3 629 32.6
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 2.1e-53 214.9 574 33.1
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.2e-51 209.1 619 32.5
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.5e-51 208.8 511 34.8
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 9.9e-51 206.1 616 33.1
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 3.2e-49 201.1 602 32.2
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 7.1e-49 199.9 658 32.1
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 7.1e-49 199.9 617 33.1
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 7.1e-49 199.9 617 33.1
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 7.1e-49 199.9 624 32.4
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 1.0e-47 196.1 682 30.6
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 1.5e-46 192.2 608 32.6
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 3.4e-43 181.0 615 32.7
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.2e-40 172.6 478 34.5
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 3.5e-40 171.0 149 65.8
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 3.3e-38 164.5 597 30.2
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.2e-37 162.5 412 36.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 3.1e-36 157.9 421 35.6
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 4.3e-30 137.5 303 36.3
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 9.0e-28 129.8 353 35.4
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 5.8e-27 127.1 643 27.7
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 3.5e-24 117.9 496 27.8
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.0e-23 114.8 578 26.6
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.0e-23 114.8 578 26.6
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 5.3e-20 104.0 168 42.3
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.2e-18 98.6 141 46.8
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 4.9e-18 97.4 147 47.6
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 2.1e-08 65.5 206 33.5


User provided reference genes

Program Settings