Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 3.4e-42 174.5 81 100.0
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 2.4e-32 141.7 71 90.1
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.4e-32 141.7 71 90.1
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.1e-32 141.4 71 88.7
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.1e-32 141.4 71 88.7
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 4.5e-31 137.5 71 84.5
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 1.3e-30 136.0 71 84.5
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 3.8e-30 134.4 71 84.5
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.1e-29 132.9 71 83.1
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.9e-29 132.1 68 89.7
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 2.5e-29 131.7 71 81.7
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 2.5e-29 131.7 71 81.7
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.6e-28 129.0 71 78.9
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 6.1e-28 127.1 71 80.3
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 6.1e-28 127.1 71 77.5
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 8.0e-28 126.7 71 78.9
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.4e-27 125.9 71 76.1
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.8e-27 125.6 71 76.1
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.8e-27 125.6 71 78.9
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.3e-27 125.2 71 77.5
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.3e-27 125.2 71 77.5
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 4.0e-27 124.4 72 77.8
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 4.0e-27 124.4 72 79.2
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 5.2e-27 124.0 72 77.8
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 5.2e-27 124.0 72 77.8
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 5.2e-27 124.0 71 77.5
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 5.2e-27 124.0 71 77.5
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.2e-26 122.9 71 76.1
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.2e-26 122.9 71 76.1
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-26 122.9 72 77.8
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-26 122.9 72 77.8
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.2e-26 122.9 72 77.8
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 1.5e-26 122.5 72 76.4
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.0e-26 122.1 71 73.2
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 2.0e-26 122.1 71 73.2
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.4e-26 121.3 72 76.4
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.4e-26 121.3 72 76.4
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 3.4e-26 121.3 72 76.4
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 3.4e-26 121.3 71 74.6
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 3.4e-26 121.3 71 73.2
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 4.4e-26 120.9 72 75.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.7e-26 120.6 71 69.0
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 5.7e-26 120.6 72 73.6
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 5.7e-26 120.6 72 73.6
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 7.5e-26 120.2 72 75.0
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 9.8e-26 119.8 72 75.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 9.8e-26 119.8 72 75.0
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 1.3e-25 119.4 72 75.0
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.3e-25 119.4 72 75.0
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.3e-25 119.4 72 75.0
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.3e-25 119.4 72 76.4
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.7e-25 119.0 72 73.6
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.7e-25 119.0 72 73.6
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.7e-25 119.0 72 73.6
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.7e-25 119.0 71 73.2
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 1.7e-25 119.0 72 73.6
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 76.1
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 2.2e-25 118.6 72 75.0
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 74.6
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 2.2e-25 118.6 71 70.4
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 2.2e-25 118.6 72 75.0
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.9e-25 118.2 72 73.6
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 2.9e-25 118.2 71 73.2
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 3.7e-25 117.9 72 72.2
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 4.9e-25 117.5 72 75.0
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 4.9e-25 117.5 72 73.6
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 4.9e-25 117.5 72 73.6
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 6.4e-25 117.1 72 73.6
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 6.4e-25 117.1 72 73.6
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 6.4e-25 117.1 72 72.2
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 8.3e-25 116.7 72 76.4
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.1e-24 116.3 72 75.0
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.8e-24 115.5 72 72.2
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 1.8e-24 115.5 71 73.2
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.8e-24 115.5 72 75.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 2.4e-24 115.2 71 71.8
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 2.4e-24 115.2 72 70.8
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.4e-24 115.2 72 70.8
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.4e-24 115.2 72 70.8
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 3.2e-24 114.8 72 68.1
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 3.2e-24 114.8 71 70.4
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 4.1e-24 114.4 71 74.6
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 4.1e-24 114.4 72 72.2
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.4e-24 114.0 72 69.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.4e-24 114.0 72 69.4
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 7.0e-24 113.6 72 69.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 7.0e-24 113.6 72 69.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 7.0e-24 113.6 72 69.4
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 7.0e-24 113.6 72 73.6
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.2e-24 113.2 72 69.4
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 9.2e-24 113.2 72 69.4
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 9.2e-24 113.2 72 70.8
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.2e-23 112.8 72 69.4
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 70.4
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 70.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 70.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 70.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 70.4
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.2e-23 112.8 72 69.4
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 1.2e-23 112.8 72 72.2
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.2e-23 112.8 72 69.4
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.2e-23 112.8 71 67.6
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.6e-23 112.5 72 69.4
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 2.0e-23 112.1 71 70.4
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 2.0e-23 112.1 72 68.1
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.0e-23 112.1 72 68.1
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 2.0e-23 112.1 72 69.4
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-23 111.7 72 68.1
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-23 111.7 72 68.1
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 2.7e-23 111.7 72 68.1
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 2.7e-23 111.7 72 68.1
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 2.7e-23 111.7 71 69.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 4.6e-23 110.9 71 71.8
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 4.6e-23 110.9 72 70.8
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 7.8e-23 110.2 72 66.7
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 7.8e-23 110.2 71 70.4
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.0e-22 109.8 72 66.7
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.7e-22 109.0 72 66.7
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 3.0e-22 108.2 71 69.0
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.0e-22 107.5 72 65.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.1e-21 106.3 70 67.1
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.3e-21 104.4 71 64.8
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 5.6e-21 104.0 69 68.1
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 5.6e-21 104.0 71 64.8
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.2e-20 102.8 54 83.3
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.2e-20 102.8 72 66.7
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.2e-20 102.8 72 66.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-20 102.4 70 70.0
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.1e-19 99.8 70 64.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 5.2e-19 97.4 61 68.9
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 4.1e-16 87.8 63 66.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 2.7e-15 85.1 70 60.0
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 7.8e-15 83.6 66 57.6
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 1.3e-14 82.8 67 55.2
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.9e-14 81.3 48 72.9
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.1e-13 79.7 64 60.9
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.9e-13 79.0 64 60.9
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 5.6e-13 77.4 41 80.5
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.6e-12 75.9 50 70.0
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.1e-12 75.5 41 78.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 6.8e-11 70.5 54 63.0
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 6.8e-11 70.5 59 54.2
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 8.9e-11 70.1 36 83.3
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 6.4e-09 63.9 36 77.8


User provided reference genes

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