Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G518.18 Capsicum annuum HOM05D007046 ORTHO05D008788 7.9e-88 327.0 159 100.0
PGSC0003DMG400030738 Solanum tuberosum HOM05D007046 ORTHO05D008788 3.6e-80 301.6 159 90.6
Solyc07g007110.4 Solanum lycopersicum HOM05D007046 ORTHO05D008788 8.0e-80 300.4 159 89.9
Sopen07g003150 Solanum pennellii HOM05D007046 ORTHO05D008788 1.0e-79 300.1 159 89.3
Nitab4.5_0005384g0010 Nicotiana tabacum HOM05D007046 ORTHO05D008788 1.1e-76 290.0 159 86.2
Peaxi162Scf00347g00020 Petunia axillaris HOM05D007046 ORTHO05D008788 1.4e-76 289.7 159 85.5
Lj9A708G24 Lonicera japonica HOM05D007046 ORTHO05D008788 3.1e-76 288.5 159 84.3
Dinv42912 Davidia involucrata HOM05D007046 ORTHO05D008788 4.1e-76 288.1 159 83.6
Dinv43188 Davidia involucrata HOM05D007046 ORTHO05D008788 4.1e-76 288.1 159 83.6
Oeu052181.1 Olea europaea HOM05D007046 ORTHO05D008788 1.6e-75 286.2 159 83.0
CSS0047212 Camellia sinensis var. sinensis HOM05D007046 ORTHO05D008788 3.2e-73 278.5 159 82.4
Hma1.2p1_0949F.1_g240590 Hydrangea macrophylla HOM05D007046 ORTHO05D008788 4.2e-73 278.1 159 80.5
Hma1.2p1_1784F.1_g302170 Hydrangea macrophylla HOM05D007046 ORTHO05D008788 4.2e-73 278.1 159 81.1
Migut.J01275 Erythranthe guttata HOM05D007046 ORTHO05D008788 1.6e-72 276.2 159 81.1
SalBow1G5965 Salvia bowleyana HOM05D007046 ORTHO05D008788 4.7e-72 274.6 159 79.9
Haze_19316 Corylus avellana HOM05D007046 ORTHO05D008788 1.8e-71 272.7 159 79.9
Rhsim03G0254300 Rhododendron simsii HOM05D007046 ORTHO05D008788 6.8e-71 270.8 159 79.9
MSTRG.19625 Avicennia marina HOM05D007046 ORTHO05D008788 3.4e-70 268.5 159 79.2
Cfa020888 Carpinus fangiana HOM05D007046 ORTHO05D008788 3.4e-70 268.5 159 78.6
Aqoxy7G03530 Aquilegia oxysepala HOM05D007046 ORTHO05D008788 4.4e-70 268.1 159 78.0
Nn8g39721 Nelumbo nucifera HOM05D007046 ORTHO05D008788 7.5e-70 267.3 159 78.6
VMungo1309G1390 Vigna mungo HOM05D007046 ORTHO05D008788 7.5e-70 267.3 159 78.6
Manes.14G138900 Manihot esculenta HOM05D007046 ORTHO05D008788 2.2e-69 265.8 159 78.0
PGR102G0910 Punica granatum HOM05D007046 ORTHO05D008788 2.8e-69 265.4 159 76.7
Sed0001104 Sechium edule HOM05D007046 ORTHO05D008788 2.8e-69 265.4 159 76.7
SGA_v2.0_scaffold229G43345 Striga asiatica HOM05D007046 ORTHO05D008788 3.7e-69 265.0 179 72.1
QL02p091361 Quercus lobata HOM05D007046 ORTHO05D008788 8.3e-69 263.8 158 78.5
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 1.1e-68 263.5 159 75.5
DCAR_008866 Daucus carota HOM05D007046 ORTHO05D008788 1.4e-68 263.1 159 77.4
Lalb_Chr11g0072851 Lupinus albus HOM05D007046 ORTHO05D008788 1.8e-68 262.7 159 77.4
ClCG02G017260 Citrullus lanatus HOM05D007046 ORTHO05D008788 2.4e-68 262.3 159 75.5
Lsat_1_v5_gn_7_47900 Lactuca sativa HOM05D007046 ORTHO05D008788 2.4e-68 262.3 159 74.2
MELO3C004443.2 Cucumis melo HOM05D007046 ORTHO05D008788 3.1e-68 261.9 159 75.5
CiPaw.15G181500 Carya illinoinensis HOM05D007046 ORTHO05D008788 7.0e-68 260.8 159 75.5
Medtr2g461260 Medicago truncatula HOM05D007046 ORTHO05D008788 9.1e-68 260.4 159 76.1
Potri.006G189900 Populus trichocarpa HOM05D007046 ORTHO05D008788 1.2e-67 260.0 159 76.7
PSO210G0748 Papaver somniferum HOM05D007046 ORTHO05D008788 1.6e-67 259.6 160 76.2
Cc06_g07400 Coffea canephora HOM05D007046 ORTHO05D008788 2.0e-67 259.2 159 74.8
HanXRQChr03g0064041 Helianthus annuus HOM05D007046 ORTHO05D008788 2.7e-67 258.8 159 73.6
TWI63G1442 Tripterygium wilfordii HOM05D007046 ORTHO05D008788 2.7e-67 258.8 159 75.5
Glyma.15G202300 Glycine max HOM05D007046 ORTHO05D008788 5.9e-67 257.7 159 75.5
TAR625G0755 Trochodendron aralioides HOM05D007046 ORTHO05D008788 7.7e-67 257.3 159 76.1
arahy.Tifrunner.gnm1.ann1.I71V0M Arachis hypogaea HOM05D007046 ORTHO05D008788 2.2e-66 255.8 159 76.7
arahy.Tifrunner.gnm1.ann1.LM8BDD Arachis hypogaea HOM05D007046 ORTHO05D008788 2.2e-66 255.8 159 76.7
Lj6g0012248 Lotus japonicus HOM05D007046 ORTHO05D008788 8.5e-66 253.8 159 74.2
Hund09318 Selenicereus undatus HOM05D007046 ORTHO05D008788 8.5e-66 253.8 159 72.3
vmacro06109 Vaccinium macrocarpon HOM05D007046 ORTHO05D008788 8.5e-66 253.8 183 68.3
ECA240G3524 Erigeron canadensis HOM05D007046 ORTHO05D008788 1.1e-65 253.4 159 70.4
PSO447G0221 Papaver somniferum HOM05D007046 ORTHO05D008788 1.1e-65 253.4 160 74.4
Sc08g0005790 Simmondsia chinensis HOM05D007046 ORTHO05D008788 1.5e-65 253.1 159 71.7
MBI15_g31411_MAGBIO Magnolia biondii HOM05D007046 ORTHO05D008788 3.2e-65 251.9 159 72.3
Ca_03117_v3 Cicer arietinum L. HOM05D007046 ORTHO05D008788 7.2e-65 250.8 159 71.7
CDE02G2211 Ceratophyllum demersum HOM05D007046 ORTHO05D008788 9.4e-65 250.4 159 71.7
Psat0s4009g0040 Pisum sativum HOM05D007046 ORTHO05D008788 2.1e-64 249.2 159 71.7
EL10Ac8g18815 Beta vulgaris HOM05D007046 ORTHO05D008788 2.3e-63 245.7 159 71.1
Ah.14g078770 Amaranthus hybridus HOM05D007046 ORTHO05D008788 3.0e-63 245.4 163 69.9
THA.LOC104815395 Tarenaya hassleriana HOM05D007046 ORTHO05D008788 3.0e-63 245.4 161 73.9
MD15G1159700 Malus domestica HOM05D007046 ORTHO05D008788 4.0e-63 245.0 159 72.3
CARHR217170 Cardamine hirsuta HOM05D007046 ORTHO05D008788 3.4e-62 241.9 161 71.4
BcaB04g18062 Brassica carinata HOM05D007046 ORTHO05D008788 5.7e-62 241.1 161 71.4
BolC8t48049H Brassica oleracea HOM05D007046 ORTHO05D008788 5.7e-62 241.1 160 71.9
Os08g0292600 Oryza sativa ssp. japonica HOM05D007046 ORTHO05D008788 5.7e-62 241.1 161 69.6
AUR62011254 Chenopodium quinoa HOM05D007046 ORTHO05D008788 7.5e-62 240.7 160 70.0
AUR62041451 Chenopodium quinoa HOM05D007046 ORTHO05D008788 7.5e-62 240.7 160 70.0
BcaC07g37677 Brassica carinata HOM05D007046 ORTHO05D008788 1.7e-61 239.6 160 71.2
Gohir.A06G049800 Gossypium hirsutum HOM05D007046 ORTHO05D008788 1.7e-61 239.6 161 72.7
A08p09580 Brassica napus HOM05D007046 ORTHO05D008788 2.2e-61 239.2 160 71.2
BraA08t32955Z Brassica rapa HOM05D007046 ORTHO05D008788 2.2e-61 239.2 160 71.2
COL.COLO4_24098 Corchorus olitorius HOM05D007046 ORTHO05D008788 2.8e-61 238.8 161 72.0
CANSAT11G2023 Cannabis sativa HOM05D007046 ORTHO05D008788 3.7e-61 238.4 160 70.6
ATR0629G031 Amborella trichopoda HOM05D007046 ORTHO05D008788 6.3e-61 237.7 155 70.3
Zm00001eb000740 Zea mays HOM05D007046 ORTHO05D008788 8.3e-61 237.3 160 70.0
Gohir.D06G049100 Gossypium hirsutum HOM05D007046 ORTHO05D008788 1.4e-60 236.5 161 72.0
Atru.chr7.254 Acer truncatum HOM05D007046 ORTHO05D008788 3.1e-60 235.3 183 63.9
AL7G43950 Arabidopsis lyrata HOM05D007046 ORTHO05D008788 7.0e-60 234.2 162 69.1
Thhalv10004727m.g Eutrema salsugineum HOM05D007046 ORTHO05D008788 7.0e-60 234.2 161 68.9
RcHm_v2.0_Chr2g0086651 Rosa chinensis HOM05D007046 ORTHO05D008788 9.1e-60 233.8 161 72.0
Aa31LG2G12340 Aethionema arabicum HOM05D007046 ORTHO05D008788 1.6e-59 233.0 161 68.9
AT5G35100 Arabidopsis thaliana HOM05D007046 ORTHO05D008788 1.6e-59 233.0 162 69.1
Duzib168G1879 Durio zibethinus HOM05D007046 ORTHO05D008788 2.0e-59 232.6 161 70.2
Gorai.010G056000 Gossypium raimondii HOM05D007046 ORTHO05D008788 4.5e-59 231.5 151 72.8
Thecc.09G142000 Theobroma cacao HOM05D007046 ORTHO05D008788 5.9e-59 231.1 161 70.2
Carub.0007s3089 Capsella rubella HOM05D007046 ORTHO05D008788 7.7e-59 230.7 162 69.1
Sp7g07260 Schrenkiella parvula HOM05D007046 ORTHO05D008788 1.7e-58 229.6 161 68.3
FAN23G1503 Fragaria x ananassa HOM05D007046 ORTHO05D008788 3.3e-57 225.3 161 69.6
Ciclev10009009m.g Citrus clementina HOM05D007046 ORTHO05D008788 7.2e-57 224.2 169 67.5
Prupe.7G254600 Prunus persica HOM05D007046 ORTHO05D008788 1.2e-56 223.4 144 72.2
FAN26G3242 Fragaria x ananassa HOM05D007046 ORTHO05D008788 2.3e-55 219.2 161 67.7
AagrBONN_evm.TU.Sc2ySwM_117.689 Anthoceros agrestis HOM05D007046 ORTHO05D008788 5.2e-55 218.0 158 65.2
FvH4_1g01710 Fragaria vesca HOM05D007046 ORTHO05D008788 6.8e-55 217.6 161 67.1
FAN19G0320 Fragaria x ananassa HOM05D007046 ORTHO05D008788 6.8e-55 217.6 161 67.1
FAN28G0193 Fragaria x ananassa HOM05D007046 ORTHO05D008788 6.8e-55 217.6 161 67.1
Mapoly0218s0001 Marchantia polymorpha HOM05D007046 ORTHO05D008788 1.7e-53 213.0 158 63.9
Pp3c14_1150 Physcomitrium patens HOM05D007046 ORTHO05D008788 7.0e-52 207.6 157 61.8
GSVIVG01012898001 Vitis vinifera HOM05D007046 ORTHO05D008788 8.6e-50 200.7 159 62.9
Eucgr.C04082 Eucalyptus grandis HOM05D007046 ORTHO05D008788 4.4e-46 188.3 103 81.6
TPR.G33523 Trifolium pratense HOM05D007046 ORTHO05D008788 2.9e-45 185.7 110 74.5
Sabra06G0145900 Salix brachista HOM05D007046 ORTHO05D008788 1.0e-42 177.2 366 33.3
SMO197G0077 Selaginella moellendorffii HOM05D007046 ORTHO05D008788 3.0e-42 175.6 146 54.1
Nitab4.5_0001021g0040 Nicotiana tabacum HOM05D007046 ORTHO05D008788 5.2e-39 164.9 90 85.6
Phvul.009G211800 Phaseolus vulgaris HOM05D007046 ORTHO05D008788 3.5e-35 152.1 89 80.9
Glyma.09G095400 Glycine max HOM05D007046 ORTHO05D008788 1.9e-33 146.4 89 77.5
Nn6g34105 Nelumbo nucifera HOM05D007046 ORTHO05D008788 5.6e-33 144.8 90 75.6
SEGI_22609 Sequoiadendron giganteum HOM05D007046 ORTHO05D008788 7.6e-30 134.4 89 69.7
Cre12.g561000 Chlamydomonas reinhardtii HOM05D007046 ORTHO05D008788 8.4e-29 131.0 141 48.2
COL.COLO4_19843 Corchorus olitorius HOM05D007046 ORTHO05D008788 2.8e-24 115.9 77 70.1
Actinidia26351 Actinidia chinensis HOM05D007046 ORTHO05D008788 1.8e-23 113.2 77 70.1
CBR_g31424 Chara braunii HOM05D007046 ORTHO05D008788 1.8e-23 113.2 89 56.2
MCO05G162 Micromonas commoda HOM05D007046 ORTHO05D008788 1.5e-22 110.2 154 40.9
PRCOL_00003052 Prasinoderma coloniale HOM05D007046 ORTHO05D008788 1.4e-20 103.6 153 36.6
Nn3g19287 Nelumbo nucifera HOM05D007046 ORTHO05D008788 6.9e-15 84.7 48 79.2
CBR_g31423 Chara braunii HOM05D007046 ORTHO05D008788 1.2e-11 73.9 68 57.4
Pp3c16_25910 Physcomitrium patens HOM05D006989 ORTHO05D008787 3.3e-09 65.9 93 37.6
Zm00001eb334490 Zea mays HOM05D006989 ORTHO05D008787 2.8e-08 62.8 83 38.6
Os01g0111100 Oryza sativa ssp. japonica HOM05D006989 ORTHO05D008787 6.2e-08 61.6 87 36.8
MCO04G083 Micromonas commoda HOM05D006989 ORTHO05D008787 6.9e-07 58.2 78 39.7
Sed0007811 Sechium edule HOM05D006989 ORTHO05D008787 6.9e-07 58.2 96 35.4
TAR371G0245 Trochodendron aralioides HOM05D006989 ORTHO05D008787 6.9e-07 58.2 98 34.7
AagrBONN_evm.TU.Sc2ySwM_228.3224 Anthoceros agrestis HOM05D006989 ORTHO05D008787 9.0e-07 57.8 89 32.6
ClCG04G011330 Citrullus lanatus HOM05D006989 ORTHO05D008787 9.0e-07 57.8 96 33.3
Hma1.2p1_0340F.1_g130010 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 9.0e-07 57.8 98 33.7
Hma1.2p1_0340F.1_g130020 Hydrangea macrophylla HOM05D006989 ORTHO05D008787 9.0e-07 57.8 98 33.7
Manes.05G117800 Manihot esculenta HOM05D006989 ORTHO05D008787 1.2e-06 57.4 96 33.3
PRCOL_00006954 Prasinoderma coloniale HOM05D006989 ORTHO05D008787 1.2e-06 57.4 139 33.1
GSVIVG01008222001 Vitis vinifera HOM05D006989 ORTHO05D008787 1.2e-06 57.4 95 34.7
CANSAT80G0764 Cannabis sativa HOM05D006989 ORTHO05D008787 1.5e-06 57.0 98 33.7
Prupe.5G215800 Prunus persica HOM05D006989 ORTHO05D008787 1.5e-06 57.0 87 37.9
Aqoxy3G00372 Aquilegia oxysepala HOM05D006989 ORTHO05D008787 2.0e-06 56.6 95 34.7
AUR62036938 Chenopodium quinoa HOM05D006989 ORTHO05D008787 2.0e-06 56.6 96 34.4
HanXRQChr16g0502051 Helianthus annuus HOM05D006989 ORTHO05D008787 2.0e-06 56.6 93 33.3
Lsat_1_v5_gn_4_112081 Lactuca sativa HOM05D006989 ORTHO05D008787 2.0e-06 56.6 93 33.3
AUR62032178 Chenopodium quinoa HOM05D006989 ORTHO05D008787 2.6e-06 56.2 96 35.4
DCAR_011597 Daucus carota HOM05D006989 ORTHO05D008787 2.6e-06 56.2 93 33.3
arahy.Tifrunner.gnm1.ann1.00I7KW Arachis hypogaea HOM05D006989 ORTHO05D008787 3.4e-06 55.8 95 31.6
EL10Ac5g11238 Beta vulgaris HOM05D006989 ORTHO05D008787 3.4e-06 55.8 96 33.3
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 3.4e-06 55.8 93 32.3
arahy.Tifrunner.gnm1.ann1.YL5ALI Arachis hypogaea HOM05D006989 ORTHO05D008787 4.5e-06 55.5 95 31.6
MSTRG.11318 Avicennia marina HOM05D006989 ORTHO05D008787 4.5e-06 55.5 95 33.7
CSS0004213 Camellia sinensis var. sinensis HOM05D006989 ORTHO05D008787 4.5e-06 55.5 107 33.6
Lj4g0002441 Lotus japonicus HOM05D006989 ORTHO05D008787 4.5e-06 55.5 137 29.9
Cc04_g07650 Coffea canephora HOM05D006989 ORTHO05D008787 5.8e-06 55.1 98 33.7
Rhsim08G0138500 Rhododendron simsii HOM05D006989 ORTHO05D008787 5.8e-06 55.1 93 34.4
VMungo0720G0602 Vigna mungo HOM05D000144 ORTHO05D000392 5.8e-06 55.1 125 32.8
CsaV3_1G006440 Cucumis sativus L. HOM05D006989 ORTHO05D008787 7.6e-06 54.7 96 32.3
MBI10_g46799_MAGBIO Magnolia biondii HOM05D006989 ORTHO05D008787 7.6e-06 54.7 93 30.1
vmacro17686 Vaccinium macrocarpon HOM05D006989 ORTHO05D008787 7.6e-06 54.7 93 35.5
Pp3c10_17680 Physcomitrium patens HOM05D000144 ORTHO05D003364 9.9e-06 54.3 120 30.8
Potri.012G058700 Populus trichocarpa HOM05D006989 ORTHO05D008787 9.9e-06 54.3 93 32.3


User provided reference genes

Program Settings